git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ComplexHeatmap@108253 bc3139a8-67e5-0310-9ffc-ced21a209358

• DESCRIPTION
• NAMESPACE
• NEWS
• R/.directory
• R/00_S4_generic_methods.R
• R/AdditiveUnit-class.R
• R/ColorMapping-class.R
• R/Heatmap-class.R
• R/HeatmapAnnotation-class.R
• R/HeatmapList-class.R
• R/HeatmapList-get_order.R
• R/SingleAnnotation-class.R
• R/annotation_fun.R
• R/decorate.R
• R/densityHeatmap.R
• R/global.R
• R/is_abs_unit.R
• R/oncoPrint.R
• R/overview.R
• R/plotDataFrame.R
• R/select.R
• R/utils.R
• README.md
• TODO
• inst/extdata/gene_expression.rds
• inst/extdata/gr.rds
• inst/extdata/measles.rds
• inst/extdata/meth.rds
• inst/extdata/sample_order.txt
• inst/extdata/tcga_lung_adenocarcinoma_provisional_ras_raf_mek_jnk_signalling.txt
• inst/tests/test-ColorMapping-class.R
• inst/tests/test-Heatmap-class.R.nottest
• inst/tests/test-HeatmapAnnotation.R.nottest
• inst/tests/test-HeatmapList-class.R.nottest
• inst/tests/test-SingleAnnotation.R.nottest
• inst/tests/test-anno.R.nottest
• inst/tests/test-utils.R
• man/.directory
• man/AdditiveUnit-class.rd
• man/AdditiveUnit.rd
• man/ColorMapping-class.rd
• man/ColorMapping.rd
• man/ComplexHeatmap-package.rd
• man/Heatmap-class.rd
• man/Heatmap.rd
• man/HeatmapAnnotation-class.rd
• man/HeatmapAnnotation.rd
• man/HeatmapList-class.rd
• man/HeatmapList.rd
• man/SingleAnnotation-class.rd
• man/SingleAnnotation.rd
• man/add.AdditiveUnit.rd
• man/add_heatmap-Heatmap-method.rd
• man/add_heatmap-HeatmapAnnotation-method.rd
• man/add_heatmap-HeatmapList-method.rd
• man/add_heatmap-dispatch.rd
• man/anno_barplot.rd
• man/anno_boxplot.rd
• man/anno_density.rd
• man/anno_histogram.rd
• man/anno_points.rd
• man/anno_text.rd
• man/annotation_legend_size-HeatmapList-method.rd
• man/color_mapping_legend-ColorMapping-method.rd
• man/columnAnnotation.rd
• man/column_anno_barplot.rd
• man/column_anno_boxplot.rd
• man/column_anno_density.rd
• man/column_anno_histogram.rd
• man/column_anno_points.rd
• man/column_anno_text.rd
• man/column_dend-Heatmap-method.rd
• man/column_dend-HeatmapList-method.rd
• man/column_dend-dispatch.rd
• man/column_order-Heatmap-method.rd
• man/column_order-HeatmapList-method.rd
• man/column_order-dispatch.rd
• man/component_height-Heatmap-method.rd
• man/component_height-HeatmapList-method.rd
• man/component_height-dispatch.rd
• man/component_width-Heatmap-method.rd
• man/component_width-HeatmapList-method.rd
• man/component_width-dispatch.rd
• man/decorate_annotation.rd
• man/decorate_column_dend.rd
• man/decorate_column_names.rd
• man/decorate_column_title.rd
• man/decorate_dend.rd
• man/decorate_dimnames.rd
• man/decorate_heatmap_body.rd
• man/decorate_row_dend.rd
• man/decorate_row_names.rd
• man/decorate_row_title.rd
• man/decorate_title.rd
• man/densityHeatmap.rd
• man/dist2.rd
• man/draw-Heatmap-method.rd
• man/draw-HeatmapAnnotation-method.rd
• man/draw-HeatmapList-method.rd
• man/draw-SingleAnnotation-method.rd
• man/draw-dispatch.rd
• man/draw_annotation-Heatmap-method.rd
• man/draw_annotation_legend-HeatmapList-method.rd
• man/draw_dend-Heatmap-method.rd
• man/draw_dimnames-Heatmap-method.rd
• man/draw_heatmap_body-Heatmap-method.rd
• man/draw_heatmap_legend-HeatmapList-method.rd
• man/draw_heatmap_list-HeatmapList-method.rd
• man/draw_title-Heatmap-method.rd
• man/draw_title-HeatmapList-method.rd
• man/draw_title-dispatch.rd
• man/get_color_mapping_list-HeatmapAnnotation-method.rd
• man/get_color_mapping_param_list-HeatmapAnnotation-method.rd
• man/grid.dendrogram.rd
• man/heatmap_legend_size-HeatmapList-method.rd
• man/ht_global_opt.rd
• man/is_abs_unit.rd
• man/make_column_cluster-Heatmap-method.rd
• man/make_layout-Heatmap-method.rd
• man/make_layout-HeatmapList-method.rd
• man/make_layout-dispatch.rd
• man/make_row_cluster-Heatmap-method.rd
• man/map_to_colors-ColorMapping-method.rd
• man/max_text_height.rd
• man/max_text_width.rd
• man/oncoPrint.rd
• man/plotDataFrame.rd
• man/prepare-Heatmap-method.rd
• man/rowAnnotation.rd
• man/row_anno_barplot.rd
• man/row_anno_boxplot.rd
• man/row_anno_density.rd
• man/row_anno_histogram.rd
• man/row_anno_points.rd
• man/row_anno_text.rd
• man/row_dend-Heatmap-method.rd
• man/row_dend-HeatmapList-method.rd
• man/row_dend-dispatch.rd
• man/row_order-Heatmap-method.rd
• man/row_order-HeatmapList-method.rd
• man/row_order-dispatch.rd
• man/select.rd
• man/set_component_height-Heatmap-method.rd
• man/show-ColorMapping-method.rd
• man/show-Heatmap-method.rd
• man/show-HeatmapAnnotation-method.rd
• man/show-HeatmapList-method.rd
• man/show-SingleAnnotation-method.rd
• man/show-dispatch.rd
• tests/test-all.R
• vignettes/custom.css
• vignettes/design.R
• vignettes/s1.introduction.Rmd
• vignettes/s2.single_heatmap.Rmd
• vignettes/s3.a_list_of_heatmaps.Rmd
• vignettes/s4.heatmap_annotation.Rmd
• vignettes/s5.legend.Rmd
• vignettes/s6.heatmap_decoration.Rmd
• vignettes/s7.interactive.Rmd
• vignettes/s8.oncoprint.Rmd
• vignettes/s9.examples.Rmd
• vignettes/select_region.gif