@@ -85,7 +85,7 @@ export(rowAnnotation)

 export(columnAnnotation)

 export(decorate_row_names)

 export(anno_text)

-export(select)

+export(selectArea)

 export(anno_density)

 import(grid)

similarity index 97%

rename from R/select.R

rename to R/selectArea.R

@@ -1,9 +1,9 @@

 # == title

-# Select a region in the heatmap

+# Select an area in the heatmap

 #

 # == param

-# -mark whether mark the selected region as a rectangle

+# -mark whether mark the selected area as a rectangle

 #

 # == details

 # Users can use mouse to click two positions on the heatmap, the function

@@ -21,7 +21,7 @@

 # # No example for this function

 # NULL

 # 

-select = function(mark = FALSE) {

+selectArea = function(mark = FALSE) {

 	if(!interactive()) {

 		stop("`select()` can only be used under interactive mode.")

@@ -142,7 +142,7 @@ select = function(mark = FALSE) {

 	}

 	cat("\nTwo clicks should be in one same heatmap (or slice) region.\n\n")

-	select(mark = mark)

+	selectArea(mark = mark)

 }

@@ -100,4 +100,4 @@ oncoPrint to enphasize sub groups.

 You can use mouse to select a region on the heatmap, it will return row index and column index which correspond to the selected region.

-![download](https://cloud.githubusercontent.com/assets/449218/9685087/456d6276-531c-11e5-9837-2ba8a081ad50.gif)

+![select_region](https://cloud.githubusercontent.com/assets/449218/10479344/2981c27a-7264-11e5-9868-7400c5dc620d.gif)

similarity index 72%

rename from man/select.rd

rename to man/selectArea.rd

@@ -1,17 +1,17 @@

-\name{select}

-\alias{select}

+\name{selectArea}

+\alias{selectArea}

 \title{

-Select a region in the heatmap

+Select an area in the heatmap

 }

 \description{

-Select a region in the heatmap

+Select an area in the heatmap

 }

 \usage{

-select(mark = FALSE)

+selectArea(mark = FALSE)

 }

 \arguments{

-  \item{mark}{whether mark the selected region as a rectangle}

+  \item{mark}{whether mark the selected area as a rectangle}

 }

 \details{

@@ -29,7 +29,7 @@ options(width = 100)

 ```

 If the heatmap is plotted in the interactive graphic device, users can use mouse

-to select a sub-region in the heatmap and retrieve index for rows and columns in that selected region.

+to select a sub-area in the heatmap and retrieve index for rows and columns in that selected area.

 Since heatmaps are always used to visualize patterns that are clustered together, 

 this feature can greatly give convinience to extract the sub-matrix that users are interested in.

Binary files a/vignettes/select_region.gif and b/vignettes/select_region.gif differ