NAMESPACE
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 S3method("+", "AdditiveUnit")
 export("+.AdditiveUnit")
 S3method("[", "AnnotationFunction")
 export("[.AnnotationFunction")
 S3method("[", "Heatmap")
 export("[.Heatmap")
 S3method("[", "HeatmapAnnotation")
 export("[.HeatmapAnnotation")
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 S3method("[", "HeatmapList")
 export("[.HeatmapList")
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 S3method("[", "SingleAnnotation")
 export("[.SingleAnnotation")
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 S3method("[", "comb_mat")
 export("[.comb_mat")
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 S3method("c", "HeatmapAnnotation")
 export("c.HeatmapAnnotation")
 S3method("dim", "Heatmap")
 export("dim.Heatmap")
 S3method("grid.draw", "Legends")
 export("grid.draw.Legends")
 S3method("height", "AnnotationFunction")
 export("height.AnnotationFunction")
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 S3method("height", "Heatmap")
 export("height.Heatmap")
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 S3method("height", "HeatmapAnnotation")
 export("height.HeatmapAnnotation")
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 S3method("height", "HeatmapList")
 export("height.HeatmapList")
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 S3method("height", "Legends")
 export("height.Legends")
 S3method("height", "SingleAnnotation")
 export("height.SingleAnnotation")
 S3method("height<-", "AnnotationFunction")
 export("height<-.AnnotationFunction")
 S3method("height<-", "HeatmapAnnotation")
 export("height<-.HeatmapAnnotation")
 S3method("height<-", "SingleAnnotation")
 export("height<-.SingleAnnotation")
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 S3method("heightDetails", "annotation_axis")
 export("heightDetails.annotation_axis")
 S3method("heightDetails", "legend")
 export("heightDetails.legend")
 S3method("heightDetails", "legend_body")
 export("heightDetails.legend_body")
 S3method("heightDetails", "packed_legends")
 export("heightDetails.packed_legends")
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 S3method("length", "HeatmapAnnotation")
 export("length.HeatmapAnnotation")
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 S3method("length", "HeatmapList")
 export("length.HeatmapList")
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 S3method("names", "HeatmapAnnotation")
 export("names.HeatmapAnnotation")
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 S3method("names", "HeatmapList")
 export("names.HeatmapList")
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 S3method("names<-", "HeatmapAnnotation")
 export("names<-.HeatmapAnnotation")
 S3method("ncol", "Heatmap")
 export("ncol.Heatmap")
 S3method("nobs", "AnnotationFunction")
 export("nobs.AnnotationFunction")
 S3method("nobs", "HeatmapAnnotation")
 export("nobs.HeatmapAnnotation")
 S3method("nobs", "SingleAnnotation")
 export("nobs.SingleAnnotation")
 S3method("nrow", "Heatmap")
 export("nrow.Heatmap")
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 S3method("print", "comb_mat")
 export("print.comb_mat")
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 S3method("size", "AnnotationFunction")
 export("size.AnnotationFunction")
 S3method("size", "HeatmapAnnotation")
 export("size.HeatmapAnnotation")
 S3method("size", "SingleAnnotation")
 export("size.SingleAnnotation")
 S3method("size<-", "AnnotationFunction")
 export("size<-.AnnotationFunction")
 S3method("size<-", "HeatmapAnnotation")
 export("size<-.HeatmapAnnotation")
 S3method("size<-", "SingleAnnotation")
 export("size<-.SingleAnnotation")
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 S3method("str", "comb_mat")
 export("str.comb_mat")
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 S3method("summary", "Heatmap")
 export("summary.Heatmap")
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 S3method("summary", "HeatmapList")
 export("summary.HeatmapList")
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 S3method("t", "comb_mat")
 export("t.comb_mat")
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 S3method("width", "AnnotationFunction")
 export("width.AnnotationFunction")
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 S3method("width", "Heatmap")
 export("width.Heatmap")
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 S3method("width", "HeatmapAnnotation")
 export("width.HeatmapAnnotation")
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 S3method("width", "HeatmapList")
 export("width.HeatmapList")
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 S3method("width", "Legends")
 export("width.Legends")
 S3method("width", "SingleAnnotation")
 export("width.SingleAnnotation")
 S3method("width<-", "AnnotationFunction")
 export("width<-.AnnotationFunction")
 S3method("width<-", "HeatmapAnnotation")
 export("width<-.HeatmapAnnotation")
 S3method("width<-", "SingleAnnotation")
 export("width<-.SingleAnnotation")
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 S3method("widthDetails", "annotation_axis")
 export("widthDetails.annotation_axis")
 S3method("widthDetails", "legend")
 export("widthDetails.legend")
 S3method("widthDetails", "legend_body")
 export("widthDetails.legend_body")
 S3method("widthDetails", "packed_legends")
 export("widthDetails.packed_legends")
ad35494a
 export("%v%")
 export("AdditiveUnit")
 export("AnnotationFunction")
 export("ColorMapping")
 export("Heatmap")
 export("HeatmapAnnotation")
 export("HeatmapList")
 export("Legend")
 export("Legends")
 export("SingleAnnotation")
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 export("UpSet")
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 export("adjust_dend_by_x")
 export("anno_barplot")
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 export("anno_block")
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 export("anno_boxplot")
 export("anno_density")
 export("anno_empty")
 export("anno_histogram")
 export("anno_horizon")
 export("anno_image")
 export("anno_joyplot")
 export("anno_lines")
 export("anno_link")
 export("anno_mark")
 export("anno_oncoprint_barplot")
 export("anno_points")
 export("anno_simple")
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 export("anno_summary")
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 export("anno_text")
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 export("anno_zoom")
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 export("annotation_axis_grob")
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 export("cluster_within_group")
 export("columnAnnotation")
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 export("comb_degree")
 export("comb_name")
 export("comb_size")
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 export("decorate_annotation")
 export("decorate_column_dend")
 export("decorate_column_names")
 export("decorate_column_title")
 export("decorate_dend")
 export("decorate_dimnames")
 export("decorate_heatmap_body")
 export("decorate_row_dend")
 export("decorate_row_names")
 export("decorate_row_title")
 export("decorate_title")
 export("default_axis_param")
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 export("default_get_type")
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 export("dend_heights")
 export("dend_xy")
 export("dendrogramGrob")
 export("densityHeatmap")
 export("dist2")
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 export("extract_comb")
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 export("getXY_in_parent_vp")
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 export("grid.annotation_axis")
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 export("grid.boxplot")
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 export("grid.dendrogram")
 export("ht_global_opt")
 export("ht_opt")
 export("is_abs_unit")
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 export("list_components")
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 export("list_to_matrix")
 export("make_comb_mat")
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 export("max_text_height")
 export("max_text_width")
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 export("merge_dendrogram")
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 export("normalize_comb_mat")
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 export("oncoPrint")
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 export("order.comb_mat")
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 export("packLegend")
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 export("pindex")
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 export("restore_matrix")
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 export("rowAnnotation")
 export("row_anno_barplot")
 export("row_anno_boxplot")
 export("row_anno_density")
 export("row_anno_histogram")
 export("row_anno_link")
 export("row_anno_points")
 export("row_anno_text")
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 export("set_name")
 export("set_size")
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 export("smartAlign2")
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 export("subset_gp")
 export("subset_matrix_by_row")
 export("subset_vector")
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 export("test_alter_fun")
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 export("unify_mat_list")
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 export("upset_right_annotation")
 export("upset_top_annotation")
ad35494a
 exportClasses("AdditiveUnit")
 export("AdditiveUnit")
 exportClasses("AnnotationFunction")
 export("AnnotationFunction")
 exportClasses("ColorMapping")
 export("ColorMapping")
 exportClasses("Heatmap")
 export("Heatmap")
 exportClasses("HeatmapAnnotation")
 export("HeatmapAnnotation")
 exportClasses("HeatmapList")
 export("HeatmapList")
 exportClasses("Legends")
 export("Legends")
 exportClasses("SingleAnnotation")
 export("SingleAnnotation")
 exportMethods("add_heatmap")
 exportMethods("adjust_heatmap_list")
 exportMethods("annotation_legend_size")
 exportMethods("color_mapping_legend")
 exportMethods("column_dend")
 exportMethods("column_order")
 exportMethods("component_height")
 exportMethods("component_width")
 exportMethods("copy_all")
 exportMethods("draw")
 exportMethods("draw_annotation")
 exportMethods("draw_annotation_legend")
 exportMethods("draw_dend")
 exportMethods("draw_dimnames")
 exportMethods("draw_heatmap_body")
 exportMethods("draw_heatmap_legend")
 exportMethods("draw_heatmap_list")
 exportMethods("draw_title")
 exportMethods("get_color_mapping_list")
 exportMethods("get_legend_param_list")
 exportMethods("heatmap_legend_size")
 exportMethods("make_column_cluster")
 exportMethods("make_layout")
 exportMethods("make_row_cluster")
 exportMethods("map_to_colors")
 exportMethods("prepare")
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 exportMethods("re_size")
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 exportMethods("row_dend")
 exportMethods("row_order")
 exportMethods("set_component_height")
 exportMethods("set_component_width")
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 import(grDevices)
 import(graphics)
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 import(grid)
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 import(methods)
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 import(stats)
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 importFrom("GetoptLong", qq)
 importFrom("GetoptLong", qq.options)
 importFrom("GetoptLong", qqcat)
 importFrom("GlobalOptions", setGlobalOptions)
 importFrom("RColorBrewer", brewer.pal)
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 importFrom("circlize", add_transparency)
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 importFrom("circlize", colorRamp2)
 importFrom("circlize", rand_color)
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 importFrom("circlize", smartAlign)
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 importFrom("clue", as.cl_hard_partition)
 importFrom("clue", cl_class_ids)
 importFrom("clue", cl_consensus)
 importFrom("clue", cl_ensemble)
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 importFrom("colorspace", diverge_hcl)
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 importFrom("colorspace", rainbow_hcl)
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 importFrom("parallel", "mclapply")
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 importFrom("utils", "combn")
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 importFrom("utils", "getFromNamespace")
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 importFrom("utils", "packageDescription")
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 importFrom("utils", "str")
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