| ad35494a |
S3method("+", "AdditiveUnit")
export("+.AdditiveUnit")
S3method("[", "AnnotationFunction")
export("[.AnnotationFunction")
S3method("[", "Heatmap")
export("[.Heatmap")
S3method("[", "HeatmapAnnotation")
export("[.HeatmapAnnotation")
|
| 1a56796e |
S3method("[", "HeatmapList")
export("[.HeatmapList")
|
| ad35494a |
S3method("[", "SingleAnnotation")
export("[.SingleAnnotation")
|
| e7a974a5 |
S3method("[", "comb_mat")
export("[.comb_mat")
|
| ad35494a |
S3method("c", "HeatmapAnnotation")
export("c.HeatmapAnnotation")
S3method("dim", "Heatmap")
export("dim.Heatmap")
S3method("grid.draw", "Legends")
export("grid.draw.Legends")
S3method("height", "AnnotationFunction")
export("height.AnnotationFunction")
|
| 3c40a7c1 |
S3method("height", "Heatmap")
export("height.Heatmap")
|
| ad35494a |
S3method("height", "HeatmapAnnotation")
export("height.HeatmapAnnotation")
|
| 3c40a7c1 |
S3method("height", "HeatmapList")
export("height.HeatmapList")
|
| ad35494a |
S3method("height", "Legends")
export("height.Legends")
S3method("height", "SingleAnnotation")
export("height.SingleAnnotation")
S3method("height<-", "AnnotationFunction")
export("height<-.AnnotationFunction")
S3method("height<-", "HeatmapAnnotation")
export("height<-.HeatmapAnnotation")
S3method("height<-", "SingleAnnotation")
export("height<-.SingleAnnotation")
|
| 249fdfa0 |
S3method("heightDetails", "annotation_axis")
export("heightDetails.annotation_axis")
S3method("heightDetails", "legend")
export("heightDetails.legend")
S3method("heightDetails", "legend_body")
export("heightDetails.legend_body")
S3method("heightDetails", "packed_legends")
export("heightDetails.packed_legends")
|
| ad35494a |
S3method("length", "HeatmapAnnotation")
export("length.HeatmapAnnotation")
|
| 1a56796e |
S3method("length", "HeatmapList")
export("length.HeatmapList")
|
| ad35494a |
S3method("names", "HeatmapAnnotation")
export("names.HeatmapAnnotation")
|
| 1a56796e |
S3method("names", "HeatmapList")
export("names.HeatmapList")
|
| ad35494a |
S3method("names<-", "HeatmapAnnotation")
export("names<-.HeatmapAnnotation")
S3method("ncol", "Heatmap")
export("ncol.Heatmap")
S3method("nobs", "AnnotationFunction")
export("nobs.AnnotationFunction")
S3method("nobs", "HeatmapAnnotation")
export("nobs.HeatmapAnnotation")
S3method("nobs", "SingleAnnotation")
export("nobs.SingleAnnotation")
S3method("nrow", "Heatmap")
export("nrow.Heatmap")
|
| e7a974a5 |
S3method("print", "comb_mat")
export("print.comb_mat")
|
| ad35494a |
S3method("size", "AnnotationFunction")
export("size.AnnotationFunction")
S3method("size", "HeatmapAnnotation")
export("size.HeatmapAnnotation")
S3method("size", "SingleAnnotation")
export("size.SingleAnnotation")
S3method("size<-", "AnnotationFunction")
export("size<-.AnnotationFunction")
S3method("size<-", "HeatmapAnnotation")
export("size<-.HeatmapAnnotation")
S3method("size<-", "SingleAnnotation")
export("size<-.SingleAnnotation")
|
| e392c692 |
S3method("str", "comb_mat")
export("str.comb_mat")
|
| ad35494a |
S3method("summary", "Heatmap")
export("summary.Heatmap")
|
| 3c40a7c1 |
S3method("summary", "HeatmapList")
export("summary.HeatmapList")
|
| e7a974a5 |
S3method("t", "comb_mat")
export("t.comb_mat")
|
| ad35494a |
S3method("width", "AnnotationFunction")
export("width.AnnotationFunction")
|
| 3c40a7c1 |
S3method("width", "Heatmap")
export("width.Heatmap")
|
| ad35494a |
S3method("width", "HeatmapAnnotation")
export("width.HeatmapAnnotation")
|
| 3c40a7c1 |
S3method("width", "HeatmapList")
export("width.HeatmapList")
|
| ad35494a |
S3method("width", "Legends")
export("width.Legends")
S3method("width", "SingleAnnotation")
export("width.SingleAnnotation")
S3method("width<-", "AnnotationFunction")
export("width<-.AnnotationFunction")
S3method("width<-", "HeatmapAnnotation")
export("width<-.HeatmapAnnotation")
S3method("width<-", "SingleAnnotation")
export("width<-.SingleAnnotation")
|
| 249fdfa0 |
S3method("widthDetails", "annotation_axis")
export("widthDetails.annotation_axis")
S3method("widthDetails", "legend")
export("widthDetails.legend")
S3method("widthDetails", "legend_body")
export("widthDetails.legend_body")
S3method("widthDetails", "packed_legends")
export("widthDetails.packed_legends")
|
| ad35494a |
export("%v%")
export("AdditiveUnit")
export("AnnotationFunction")
export("ColorMapping")
export("Heatmap")
export("HeatmapAnnotation")
export("HeatmapList")
export("Legend")
export("Legends")
export("SingleAnnotation")
|
| e7a974a5 |
export("UpSet")
|
| ad35494a |
export("adjust_dend_by_x")
export("anno_barplot")
|
| 864bd889 |
export("anno_block")
|
| ad35494a |
export("anno_boxplot")
export("anno_density")
export("anno_empty")
export("anno_histogram")
export("anno_horizon")
export("anno_image")
export("anno_joyplot")
export("anno_lines")
export("anno_link")
export("anno_mark")
export("anno_oncoprint_barplot")
export("anno_points")
export("anno_simple")
|
| 1a56796e |
export("anno_summary")
|
| ad35494a |
export("anno_text")
|
| fda8e6f1 |
export("anno_zoom")
|
| 1a56796e |
export("annotation_axis_grob")
|
| ad35494a |
export("cluster_within_group")
export("columnAnnotation")
|
| e7a974a5 |
export("comb_degree")
export("comb_name")
export("comb_size")
|
| ad35494a |
export("decorate_annotation")
export("decorate_column_dend")
export("decorate_column_names")
export("decorate_column_title")
export("decorate_dend")
export("decorate_dimnames")
export("decorate_heatmap_body")
export("decorate_row_dend")
export("decorate_row_names")
export("decorate_row_title")
export("decorate_title")
export("default_axis_param")
|
| fda8e6f1 |
export("default_get_type")
|
| ad35494a |
export("dend_heights")
export("dend_xy")
export("dendrogramGrob")
export("densityHeatmap")
export("dist2")
|
| e7a974a5 |
export("extract_comb")
|
| 3c40a7c1 |
export("getXY_in_parent_vp")
|
| 03d6a867 |
export("grid.annotation_axis")
|
| 1a56796e |
export("grid.boxplot")
|
| ad35494a |
export("grid.dendrogram")
export("ht_global_opt")
export("ht_opt")
export("is_abs_unit")
|
| d9834c56 |
export("list_components")
|
| e7a974a5 |
export("list_to_matrix")
export("make_comb_mat")
|
| ad35494a |
export("max_text_height")
export("max_text_width")
|
| 65fecf1c |
export("merge_dendrogram")
|
| a8d8d9df |
export("normalize_comb_mat")
|
| ad35494a |
export("oncoPrint")
|
| a8d8d9df |
export("order.comb_mat")
|
| ad35494a |
export("packLegend")
|
| 6f11a271 |
export("pindex")
|
| 9c4d56c4 |
export("restore_matrix")
|
| ad35494a |
export("rowAnnotation")
export("row_anno_barplot")
export("row_anno_boxplot")
export("row_anno_density")
export("row_anno_histogram")
export("row_anno_link")
export("row_anno_points")
export("row_anno_text")
|
| e7a974a5 |
export("set_name")
export("set_size")
|
| 1f0f3def |
export("smartAlign2")
|
| ad35494a |
export("subset_gp")
export("subset_matrix_by_row")
export("subset_vector")
|
| 79f19153 |
export("test_alter_fun")
|
| ad35494a |
export("unify_mat_list")
|
| a8d8d9df |
export("upset_right_annotation")
export("upset_top_annotation")
|
| ad35494a |
exportClasses("AdditiveUnit")
export("AdditiveUnit")
exportClasses("AnnotationFunction")
export("AnnotationFunction")
exportClasses("ColorMapping")
export("ColorMapping")
exportClasses("Heatmap")
export("Heatmap")
exportClasses("HeatmapAnnotation")
export("HeatmapAnnotation")
exportClasses("HeatmapList")
export("HeatmapList")
exportClasses("Legends")
export("Legends")
exportClasses("SingleAnnotation")
export("SingleAnnotation")
exportMethods("add_heatmap")
exportMethods("adjust_heatmap_list")
exportMethods("annotation_legend_size")
exportMethods("color_mapping_legend")
exportMethods("column_dend")
exportMethods("column_order")
exportMethods("component_height")
exportMethods("component_width")
exportMethods("copy_all")
exportMethods("draw")
exportMethods("draw_annotation")
exportMethods("draw_annotation_legend")
exportMethods("draw_dend")
exportMethods("draw_dimnames")
exportMethods("draw_heatmap_body")
exportMethods("draw_heatmap_legend")
exportMethods("draw_heatmap_list")
exportMethods("draw_title")
exportMethods("get_color_mapping_list")
exportMethods("get_legend_param_list")
exportMethods("heatmap_legend_size")
exportMethods("make_column_cluster")
exportMethods("make_layout")
exportMethods("make_row_cluster")
exportMethods("map_to_colors")
exportMethods("prepare")
|
| 64d651fe |
exportMethods("re_size")
|
| ad35494a |
exportMethods("row_dend")
exportMethods("row_order")
exportMethods("set_component_height")
exportMethods("set_component_width")
|
| aad95421 |
|
| dc49bda8 |
import(grDevices)
import(graphics)
|
| d1da987e |
import(grid)
|
| 1b03a7f0 |
import(methods)
|
| 9487d939 |
import(stats)
|
| dc49bda8 |
importFrom("GetoptLong", qq)
importFrom("GetoptLong", qq.options)
importFrom("GetoptLong", qqcat)
importFrom("GlobalOptions", setGlobalOptions)
importFrom("RColorBrewer", brewer.pal)
|
| ad35494a |
importFrom("circlize", add_transparency)
|
| d1da987e |
importFrom("circlize", colorRamp2)
importFrom("circlize", rand_color)
|
| f6257946 |
importFrom("circlize", smartAlign)
|
| edfce525 |
importFrom("clue", as.cl_hard_partition)
importFrom("clue", cl_class_ids)
importFrom("clue", cl_consensus)
importFrom("clue", cl_ensemble)
|
| d1da987e |
importFrom("colorspace", diverge_hcl)
|
| dc49bda8 |
importFrom("colorspace", rainbow_hcl)
|
| 0c139e20 |
importFrom("parallel", "mclapply")
|
| e7a974a5 |
importFrom("utils", "combn")
|
| aad95421 |
importFrom("utils", "getFromNamespace")
|
| 4b33e71b |
importFrom("utils", "packageDescription")
|
| ad35494a |
importFrom("utils", "str")
|
| edfce525 |
|
