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fixed up tests

Tom Sherman authored on 07/11/2018 22:38:49
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-% Generated by roxygen2: do not edit by hand
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-% Please edit documentation in R/Package.R
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-\docType{data}
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-\name{tf2ugFC}
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-\alias{tf2ugFC}
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-\title{Gene sets defined by transcription factors defined from TRANSFAC.}
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-\usage{
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-tf2ugFC
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-}
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-\description{
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-Gene sets defined by transcription factors defined from TRANSFAC.
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-}
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updated config to commit file permissions

Tom Sherman authored on 29/10/2018 19:56:14
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Tom Sherman authored on 26/07/2018 19:21:36
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 \description{
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 Gene sets defined by transcription factors defined from TRANSFAC.
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 }
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-
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cleaned up directory

Tom Sherman authored on 26/07/2018 18:15:21
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 % Generated by roxygen2: do not edit by hand
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-% Please edit documentation in R/package.R
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+% Please edit documentation in R/Package.R
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 \docType{data}
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 \name{tf2ugFC}
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 \alias{tf2ugFC}
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passing checks

Tom Sherman authored on 05/06/2018 22:04:02
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+% Generated by roxygen2: do not edit by hand
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+% Please edit documentation in R/package.R
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+\docType{data}
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+\name{tf2ugFC}
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+\alias{tf2ugFC}
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+\title{Gene sets defined by transcription factors defined from TRANSFAC.}
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+\usage{
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+tf2ugFC
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+}
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+\description{
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+Gene sets defined by transcription factors defined from TRANSFAC.
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+}
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+
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make lintr happy

Tom Sherman authored on 31/05/2018 21:28:52
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-\name{tf2ugFC}
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-\docType{data}
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-\alias{tf2ugFC}
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-\title{Gene sets defined by transcription factors defined from TRANSFAC.}
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-\description{List of genes contained in gastrointestinal stromal tumor cell line measurements that are regulated by transcription factors in the TRANSFAC database.  Used for the gene set analysis in Ochs et al. (2009).
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-}
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-\usage{TFGSList}
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-\format{Data.frame containing genes (rows) regulated by each transcription factor (columns).}
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-\references{Ochs, M., Rink, L., Tarn, C., Mburu, S., Taguchi, T., Eisenberg, B., and Godwin, A. (2009). Detection of treatment-induced changes in signaling pathways in gastrointestinal stromal tumors using transcriptomic data. Cancer Res, 69(23), 9125-9132.}
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-\keyword{datasets}
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Added the CoGAPS package.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CoGAPS@48067 bc3139a8-67e5-0310-9ffc-ced21a209358

c.wong authored on 12/07/2010 17:26:34
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+\name{tf2ugFC}
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+\docType{data}
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+\alias{tf2ugFC}
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+\title{Gene sets defined by transcription factors defined from TRANSFAC.}
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+\description{List of genes contained in gastrointestinal stromal tumor cell line measurements that are regulated by transcription factors in the TRANSFAC database.  Used for the gene set analysis in Ochs et al. (2009).
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+}
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+\usage{TFGSList}
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+\format{Data.frame containing genes (rows) regulated by each transcription factor (columns).}
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+\references{Ochs, M., Rink, L., Tarn, C., Mburu, S., Taguchi, T., Eisenberg, B., and Godwin, A. (2009). Detection of treatment-induced changes in signaling pathways in gastrointestinal stromal tumors using transcriptomic data. Cancer Res, 69(23), 9125-9132.}
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+\keyword{datasets}