1. CoGAPS
  2. Commit c94aa80ef8a1f7349cd81788c7482ccb11f41d58
Browse code

added citation

Tom Sherman authored on 01/08/2018 21:12:23
Showing 4 changed files
config.log
History View file @ c94aa80ef
1 1 
new file mode 100644
... ... 
@@ -0,0 +1,1008 @@
1 
+This file contains any messages produced by compilers while
2 
+running configure, to aid debugging if configure makes a mistake.
3 
+
4 
+It was created by CoGAPS configure 3.1.3, which was
5 
+generated by GNU Autoconf 2.69.  Invocation command line was
6 
+
7 
+  $ ./configure
8 
+
9 
+## --------- ##
10 
+## Platform. ##
11 
+## --------- ##
12 
+
13 
+hostname = MBL-D518NN2
14 
+uname -m = x86_64
15 
+uname -r = 4.4.0-43-Microsoft
16 
+uname -s = Linux
17 
+uname -v = #1-Microsoft Wed Dec 31 14:42:53 PST 2014
18 
+
19 
+/usr/bin/uname -p = unknown
20 
+/bin/uname -X     = unknown
21 
+
22 
+/bin/arch              = unknown
23 
+/usr/bin/arch -k       = unknown
24 
+/usr/convex/getsysinfo = unknown
25 
+/usr/bin/hostinfo      = unknown
26 
+/bin/machine           = unknown
27 
+/usr/bin/oslevel       = unknown
28 
+/bin/universe          = unknown
29 
+
30 
+PATH: /usr/local/sbin
31 
+PATH: /usr/local/bin
32 
+PATH: /usr/sbin
33 
+PATH: /usr/bin
34 
+PATH: /sbin
35 
+PATH: /bin
36 
+PATH: /snap/bin
37 
+
38 
+
39 
+## ----------- ##
40 
+## Core tests. ##
41 
+## ----------- ##
42 
+
43 
+configure:2267: checking for a BSD-compatible install
44 
+configure:2335: result: /usr/bin/install -c
45 
+configure:2346: checking whether build environment is sane
46 
+configure:2401: result: yes
47 
+configure:2552: checking for a thread-safe mkdir -p
48 
+configure:2591: result: /bin/mkdir -p
49 
+configure:2598: checking for gawk
50 
+configure:2614: found /usr/bin/gawk
51 
+configure:2625: result: gawk
52 
+configure:2636: checking whether make sets $(MAKE)
53 
+configure:2658: result: yes
54 
+configure:2687: checking whether make supports nested variables
55 
+configure:2704: result: yes
56 
+configure:2853: checking for style of include used by make
57 
+configure:2881: result: GNU
58 
+configure:3016: checking for C++ compiler version
59 
+configure:3025: ccache clang++ --version >&5
60 
+clang version 5.0.0-3~16.04.1 (tags/RELEASE_500/final)
61 
+Target: x86_64-pc-linux-gnu
62 
+Thread model: posix
63 
+InstalledDir: /bin
64 
+configure:3036: $? = 0
65 
+configure:3025: ccache clang++ -v >&5
66 
+clang version 5.0.0-3~16.04.1 (tags/RELEASE_500/final)
67 
+Target: x86_64-pc-linux-gnu
68 
+Thread model: posix
69 
+InstalledDir: /bin
70 
+Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/5
71 
+Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/5.4.0
72 
+Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6
73 
+Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6.0.0
74 
+Selected GCC installation: /usr/lib/gcc/x86_64-linux-gnu/5.4.0
75 
+Candidate multilib: .;@m64
76 
+... rest of stderr output deleted ...
77 
+configure:3036: $? = 0
78 
+configure:3025: ccache clang++ -V >&5
79 
+clang: error: argument to '-V' is missing (expected 1 value)
80 
+clang: error: no input files
81 
+configure:3036: $? = 1
82 
+configure:3025: ccache clang++ -qversion >&5
83 
+clang: error: unknown argument: '-qversion'
84 
+clang: error: no input files
85 
+configure:3036: $? = 1
86 
+configure:3056: checking whether the C++ compiler works
87 
+configure:3078: ccache clang++ -UNDEBUG -Wall -pedantic -g -O0   conftest.cpp  >&5
88 
+configure:3082: $? = 0
89 
+configure:3130: result: yes
90 
+configure:3133: checking for C++ compiler default output file name
91 
+configure:3135: result: a.out
92 
+configure:3141: checking for suffix of executables
93 
+configure:3148: ccache clang++ -o conftest -UNDEBUG -Wall -pedantic -g -O0   conftest.cpp  >&5
94 
+configure:3152: $? = 0
95 
+configure:3174: result:
96 
+configure:3196: checking whether we are cross compiling
97 
+configure:3204: ccache clang++ -o conftest -UNDEBUG -Wall -pedantic -g -O0   conftest.cpp  >&5
98 
+configure:3208: $? = 0
99 
+configure:3215: ./conftest
100 
+configure:3219: $? = 0
101 
+configure:3234: result: no
102 
+configure:3239: checking for suffix of object files
103 
+configure:3261: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  conftest.cpp >&5
104 
+configure:3265: $? = 0
105 
+configure:3286: result: o
106 
+configure:3290: checking whether we are using the GNU C++ compiler
107 
+configure:3309: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  conftest.cpp >&5
108 
+configure:3309: $? = 0
109 
+configure:3318: result: yes
110 
+configure:3327: checking whether ccache clang++ accepts -g
111 
+configure:3347: ccache clang++ -c -g  conftest.cpp >&5
112 
+configure:3347: $? = 0
113 
+configure:3388: result: yes
114 
+configure:3413: checking dependency style of ccache clang++
115 
+configure:3524: result: none
116 
+configure:3545: checking how to run the C++ preprocessor
117 
+configure:3572: ccache clang++ -E  conftest.cpp
118 
+configure:3572: $? = 0
119 
+configure:3586: ccache clang++ -E  conftest.cpp
120 
+conftest.cpp:11:10: fatal error: 'ac_nonexistent.h' file not found
121 
+#include <ac_nonexistent.h>
122 
+         ^~~~~~~~~~~~~~~~~~
123 
+1 error generated.
124 
+configure:3586: $? = 1
125 
+configure: failed program was:
126 
+| /* confdefs.h */
127 
+| #define PACKAGE_NAME "CoGAPS"
128 
+| #define PACKAGE_TARNAME "cogaps"
129 
+| #define PACKAGE_VERSION "3.1.3"
130 
+| #define PACKAGE_STRING "CoGAPS 3.1.3"
131 
+| #define PACKAGE_BUGREPORT ""
132 
+| #define PACKAGE_URL ""
133 
+| #define PACKAGE "cogaps"
134 
+| #define VERSION "3.1.3"
135 
+| /* end confdefs.h.  */
136 
+| #include <ac_nonexistent.h>
137 
+configure:3611: result: ccache clang++ -E
138 
+configure:3631: ccache clang++ -E  conftest.cpp
139 
+configure:3631: $? = 0
140 
+configure:3645: ccache clang++ -E  conftest.cpp
141 
+conftest.cpp:11:10: fatal error: 'ac_nonexistent.h' file not found
142 
+#include <ac_nonexistent.h>
143 
+         ^~~~~~~~~~~~~~~~~~
144 
+1 error generated.
145 
+configure:3645: $? = 1
146 
+configure: failed program was:
147 
+| /* confdefs.h */
148 
+| #define PACKAGE_NAME "CoGAPS"
149 
+| #define PACKAGE_TARNAME "cogaps"
150 
+| #define PACKAGE_VERSION "3.1.3"
151 
+| #define PACKAGE_STRING "CoGAPS 3.1.3"
152 
+| #define PACKAGE_BUGREPORT ""
153 
+| #define PACKAGE_URL ""
154 
+| #define PACKAGE "cogaps"
155 
+| #define VERSION "3.1.3"
156 
+| /* end confdefs.h.  */
157 
+| #include <ac_nonexistent.h>
158 
+configure:3787: checking for C++ compiler version
159 
+configure:3796: ccache clang++ --version >&5
160 
+clang version 5.0.0-3~16.04.1 (tags/RELEASE_500/final)
161 
+Target: x86_64-pc-linux-gnu
162 
+Thread model: posix
163 
+InstalledDir: /bin
164 
+configure:3807: $? = 0
165 
+configure:3796: ccache clang++ -v >&5
166 
+clang version 5.0.0-3~16.04.1 (tags/RELEASE_500/final)
167 
+Target: x86_64-pc-linux-gnu
168 
+Thread model: posix
169 
+InstalledDir: /bin
170 
+Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/5
171 
+Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/5.4.0
172 
+Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6
173 
+Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6.0.0
174 
+Selected GCC installation: /usr/lib/gcc/x86_64-linux-gnu/5.4.0
175 
+Candidate multilib: .;@m64
176 
+... rest of stderr output deleted ...
177 
+configure:3807: $? = 0
178 
+configure:3796: ccache clang++ -V >&5
179 
+clang: error: argument to '-V' is missing (expected 1 value)
180 
+clang: error: no input files
181 
+configure:3807: $? = 1
182 
+configure:3796: ccache clang++ -qversion >&5
183 
+clang: error: unknown argument: '-qversion'
184 
+clang: error: no input files
185 
+configure:3807: $? = 1
186 
+configure:3811: checking whether we are using the GNU C++ compiler
187 
+configure:3839: result: yes
188 
+configure:3848: checking whether ccache clang++ accepts -g
189 
+configure:3909: result: yes
190 
+configure:3934: checking dependency style of ccache clang++
191 
+configure:4045: result: none
192 
+configure:4094: checking for C++ compiler vendor
193 
+configure:4141: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  conftest.cpp >&5
194 
+conftest.cpp:17:9: error: use of undeclared identifier 'thisisanerror'
195 
+        thisisanerror;
196 
+        ^
197 
+1 error generated.
198 
+configure:4141: $? = 1
199 
+configure: failed program was:
200 
+| /* confdefs.h */
201 
+| #define PACKAGE_NAME "CoGAPS"
202 
+| #define PACKAGE_TARNAME "cogaps"
203 
+| #define PACKAGE_VERSION "3.1.3"
204 
+| #define PACKAGE_STRING "CoGAPS 3.1.3"
205 
+| #define PACKAGE_BUGREPORT ""
206 
+| #define PACKAGE_URL ""
207 
+| #define PACKAGE "cogaps"
208 
+| #define VERSION "3.1.3"
209 
+| /* end confdefs.h.  */
210 
+|
211 
+| int
212 
+| main ()
213 
+| {
214 
+|
215 
+|       #if !(defined(__ICC) || defined(__ECC) || defined(__INTEL_COMPILER))
216 
+|         thisisanerror;
217 
+|       #endif
218 
+|
219 
+|   ;
220 
+|   return 0;
221 
+| }
222 
+configure:4141: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  conftest.cpp >&5
223 
+conftest.cpp:17:9: error: use of undeclared identifier 'thisisanerror'
224 
+        thisisanerror;
225 
+        ^
226 
+1 error generated.
227 
+configure:4141: $? = 1
228 
+configure: failed program was:
229 
+| /* confdefs.h */
230 
+| #define PACKAGE_NAME "CoGAPS"
231 
+| #define PACKAGE_TARNAME "cogaps"
232 
+| #define PACKAGE_VERSION "3.1.3"
233 
+| #define PACKAGE_STRING "CoGAPS 3.1.3"
234 
+| #define PACKAGE_BUGREPORT ""
235 
+| #define PACKAGE_URL ""
236 
+| #define PACKAGE "cogaps"
237 
+| #define VERSION "3.1.3"
238 
+| /* end confdefs.h.  */
239 
+|
240 
+| int
241 
+| main ()
242 
+| {
243 
+|
244 
+|       #if !(defined(__xlc__) || defined(__xlC__) || defined(__IBMC__) || defined(__IBMCPP__))
245 
+|         thisisanerror;
246 
+|       #endif
247 
+|
248 
+|   ;
249 
+|   return 0;
250 
+| }
251 
+configure:4141: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  conftest.cpp >&5
252 
+conftest.cpp:17:9: error: use of undeclared identifier 'thisisanerror'
253 
+        thisisanerror;
254 
+        ^
255 
+1 error generated.
256 
+configure:4141: $? = 1
257 
+configure: failed program was:
258 
+| /* confdefs.h */
259 
+| #define PACKAGE_NAME "CoGAPS"
260 
+| #define PACKAGE_TARNAME "cogaps"
261 
+| #define PACKAGE_VERSION "3.1.3"
262 
+| #define PACKAGE_STRING "CoGAPS 3.1.3"
263 
+| #define PACKAGE_BUGREPORT ""
264 
+| #define PACKAGE_URL ""
265 
+| #define PACKAGE "cogaps"
266 
+| #define VERSION "3.1.3"
267 
+| /* end confdefs.h.  */
268 
+|
269 
+| int
270 
+| main ()
271 
+| {
272 
+|
273 
+|       #if !(defined(__PATHCC__) || defined(__PATHSCALE__))
274 
+|         thisisanerror;
275 
+|       #endif
276 
+|
277 
+|   ;
278 
+|   return 0;
279 
+| }
280 
+configure:4141: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  conftest.cpp >&5
281 
+configure:4141: $? = 0
282 
+configure:4149: result: clang
283 
+configure:4152: checking for a sed that does not truncate output
284 
+configure:4216: result: /bin/sed
285 
+configure:4223: checking for C++ compiler version
286 
+configure:4383: ccache clang++ -o conftest -UNDEBUG -Wall -pedantic -g -O0   conftest.cpp  >&5
287 
+configure:4383: $? = 0
288 
+configure:4383: ./conftest
289 
+configure:4383: $? = 0
290 
+configure:4392: ccache clang++ -o conftest -UNDEBUG -Wall -pedantic -g -O0   conftest.cpp  >&5
291 
+configure:4392: $? = 0
292 
+configure:4392: ./conftest
293 
+configure:4392: $? = 0
294 
+configure:4401: ccache clang++ -o conftest -UNDEBUG -Wall -pedantic -g -O0   conftest.cpp  >&5
295 
+configure:4401: $? = 0
296 
+configure:4401: ./conftest
297 
+configure:4401: $? = 0
298 
+configure:5128: result: 5.0.0
299 
+configure:5135: checking for OpenMP flag of C++ compiler
300 
+configure:5177: ccache clang++ -o conftest -UNDEBUG -Wall -pedantic -g -O0 -fopenmp   conftest.cpp  >&5
301 
+configure:5177: $? = 0
302 
+configure:5186: result: -fopenmp
303 
+configure:5207: checking build system type
304 
+configure:5221: result: x86_64-pc-linux-gnu
305 
+configure:5241: checking host system type
306 
+configure:5254: result: x86_64-pc-linux-gnu
307 
+configure:5322: checking for gcc
308 
+configure:5338: found /usr/bin/gcc
309 
+configure:5349: result: gcc
310 
+configure:5578: checking for C compiler version
311 
+configure:5587: gcc --version >&5
312 
+gcc (Ubuntu 5.4.0-6ubuntu1~16.04.9) 5.4.0 20160609
313 
+Copyright (C) 2015 Free Software Foundation, Inc.
314 
+This is free software; see the source for copying conditions.  There is NO
315 
+warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
316 
+
317 
+configure:5598: $? = 0
318 
+configure:5587: gcc -v >&5
319 
+Using built-in specs.
320 
+COLLECT_GCC=gcc
321 
+COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper
322 
+Target: x86_64-linux-gnu
323 
+Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.9' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
324 
+Thread model: posix
325 
+gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.9)
326 
+configure:5598: $? = 0
327 
+configure:5587: gcc -V >&5
328 
+gcc: error: unrecognized command line option '-V'
329 
+gcc: fatal error: no input files
330 
+compilation terminated.
331 
+configure:5598: $? = 1
332 
+configure:5587: gcc -qversion >&5
333 
+gcc: error: unrecognized command line option '-qversion'
334 
+gcc: fatal error: no input files
335 
+compilation terminated.
336 
+configure:5598: $? = 1
337 
+configure:5602: checking whether we are using the GNU C compiler
338 
+configure:5621: gcc -c -UNDEBUG -Wall -pedantic -g -O0  conftest.c >&5
339 
+configure:5621: $? = 0
340 
+configure:5630: result: yes
341 
+configure:5639: checking whether gcc accepts -g
342 
+configure:5659: gcc -c -g  conftest.c >&5
343 
+configure:5659: $? = 0
344 
+configure:5700: result: yes
345 
+configure:5717: checking for gcc option to accept ISO C89
346 
+configure:5780: gcc  -c -UNDEBUG -Wall -pedantic -g -O0  conftest.c >&5
347 
+configure:5780: $? = 0
348 
+configure:5793: result: none needed
349 
+configure:5818: checking whether gcc understands -c and -o together
350 
+configure:5840: gcc -c conftest.c -o conftest2.o
351 
+configure:5843: $? = 0
352 
+configure:5840: gcc -c conftest.c -o conftest2.o
353 
+configure:5843: $? = 0
354 
+configure:5855: result: yes
355 
+configure:5874: checking dependency style of gcc
356 
+configure:5985: result: none
357 
+configure:6008: checking for x86 cpuid  output
358 
+configure:6038: gcc -o conftest -UNDEBUG -Wall -pedantic -g -O0   conftest.c  >&5
359 
+conftest.c: In function 'main':
360 
+conftest.c:17:15: error: expected expression before ',' token
361 
+      int op = , level = 0, eax, ebx, ecx, edx;
362 
+               ^
363 
+configure:6038: $? = 1
364 
+configure: program exited with status 1
365 
+configure: failed program was:
366 
+| /* confdefs.h */
367 
+| #define PACKAGE_NAME "CoGAPS"
368 
+| #define PACKAGE_TARNAME "cogaps"
369 
+| #define PACKAGE_VERSION "3.1.3"
370 
+| #define PACKAGE_STRING "CoGAPS 3.1.3"
371 
+| #define PACKAGE_BUGREPORT ""
372 
+| #define PACKAGE_URL ""
373 
+| #define PACKAGE "cogaps"
374 
+| #define VERSION "3.1.3"
375 
+| #define HAVE_OPENMP 1
376 
+| /* end confdefs.h.  */
377 
+| #include <stdio.h>
378 
+| int
379 
+| main ()
380 
+| {
381 
+|
382 
+|      int op = , level = 0, eax, ebx, ecx, edx;
383 
+|      FILE *f;
384 
+|       __asm__ __volatile__ ("cpuid"
385 
+|         : "=a" (eax), "=b" (ebx), "=c" (ecx), "=d" (edx)
386 
+|         : "a" (op), "2" (level));
387 
+|
388 
+|      f = fopen("conftest_cpuid", "w"); if (!f) return 1;
389 
+|      fprintf(f, "%x:%x:%x:%x\n", eax, ebx, ecx, edx);
390 
+|      fclose(f);
391 
+|      return 0;
392 
+|
393 
+|   ;
394 
+|   return 0;
395 
+| }
396 
+configure:6048: result: unknown
397 
+configure:6065: checking for x86-AVX xgetbv  output
398 
+configure:6095: gcc -o conftest -UNDEBUG -Wall -pedantic -g -O0   conftest.c  >&5
399 
+conftest.c: In function 'main':
400 
+conftest.c:17:15: error: expected expression before ',' token
401 
+      int op = , eax, edx;
402 
+               ^
403 
+configure:6095: $? = 1
404 
+configure: program exited with status 1
405 
+configure: failed program was:
406 
+| /* confdefs.h */
407 
+| #define PACKAGE_NAME "CoGAPS"
408 
+| #define PACKAGE_TARNAME "cogaps"
409 
+| #define PACKAGE_VERSION "3.1.3"
410 
+| #define PACKAGE_STRING "CoGAPS 3.1.3"
411 
+| #define PACKAGE_BUGREPORT ""
412 
+| #define PACKAGE_URL ""
413 
+| #define PACKAGE "cogaps"
414 
+| #define VERSION "3.1.3"
415 
+| #define HAVE_OPENMP 1
416 
+| /* end confdefs.h.  */
417 
+| #include <stdio.h>
418 
+| int
419 
+| main ()
420 
+| {
421 
+|
422 
+|      int op = , eax, edx;
423 
+|      FILE *f;
424 
+|       /* Opcodes for xgetbv */
425 
+|       __asm__ __volatile__ (".byte 0x0f, 0x01, 0xd0"
426 
+|         : "=a" (eax), "=d" (edx)
427 
+|         : "c" (op));
428 
+|      f = fopen("conftest_xgetbv", "w"); if (!f) return 1;
429 
+|      fprintf(f, "%x:%x\n", eax, edx);
430 
+|      fclose(f);
431 
+|      return 0;
432 
+|
433 
+|   ;
434 
+|   return 0;
435 
+| }
436 
+configure:6105: result: unknown
437 
+configure:6195: checking for x86 cpuid 0x00000000 output
438 
+configure:6225: gcc -o conftest -UNDEBUG -Wall -pedantic -g -O0   conftest.c  >&5
439 
+configure:6225: $? = 0
440 
+configure:6225: ./conftest
441 
+configure:6225: $? = 0
442 
+configure:6235: result: 16:756e6547:6c65746e:49656e69
443 
+configure:6258: checking for x86 cpuid 0x80000000 output
444 
+configure:6288: gcc -o conftest -UNDEBUG -Wall -pedantic -g -O0   conftest.c  >&5
445 
+configure:6288: $? = 0
446 
+configure:6288: ./conftest
447 
+configure:6288: $? = 0
448 
+configure:6298: result: 80000008:0:0:0
449 
+configure:6323: checking for x86 cpuid 0x00000001 output
450 
+configure:6353: gcc -o conftest -UNDEBUG -Wall -pedantic -g -O0   conftest.c  >&5
451 
+configure:6353: $? = 0
452 
+configure:6353: ./conftest
453 
+configure:6353: $? = 0
454 
+configure:6363: result: 806ea:7100800:7ffafbff:bfebfbff
455 
+configure:6390: checking for x86 cpuid 0x00000007 output
456 
+configure:6420: gcc -o conftest -UNDEBUG -Wall -pedantic -g -O0   conftest.c  >&5
457 
+configure:6420: $? = 0
458 
+configure:6420: ./conftest
459 
+configure:6420: $? = 0
460 
+configure:6430: result: 0:29c6fbf:0:0
461 
+configure:6456: checking for x86 cpuid 0x80000001 output
462 
+configure:6486: gcc -o conftest -UNDEBUG -Wall -pedantic -g -O0   conftest.c  >&5
463 
+configure:6486: $? = 0
464 
+configure:6486: ./conftest
465 
+configure:6486: $? = 0
466 
+configure:6496: result: 0:0:121:2c100800
467 
+configure:6555: gcc -o conftest -UNDEBUG -Wall -pedantic -g -O0   conftest.c  >&5
468 
+configure:6555: $? = 0
469 
+configure:6555: ./conftest
470 
+configure:6555: $? = 0
471 
+configure:6584: checking for x86-AVX xgetbv 0x00000000 output
472 
+configure:6614: gcc -o conftest -UNDEBUG -Wall -pedantic -g -O0   conftest.c  >&5
473 
+configure:6614: $? = 0
474 
+configure:6614: ./conftest
475 
+configure:6614: $? = 0
476 
+configure:6624: result: 1f:0
477 
+configure:6678: checking whether RDRND is supported by the processor
478 
+configure:6691: result: yes
479 
+configure:6695: checking whether RDRND is supported by the processor and OS
480 
+configure:6708: result: yes
481 
+configure:6713: checking whether C++ compiler accepts -mrdrnd
482 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -mrdrnd  conftest.cpp >&5
483 
+configure:6732: $? = 0
484 
+configure:6741: result: yes
485 
+configure:6678: checking whether BMI1 is supported by the processor
486 
+configure:6691: result: yes
487 
+configure:6695: checking whether BMI1 is supported by the processor and OS
488 
+configure:6708: result: yes
489 
+configure:6713: checking whether C++ compiler accepts -mbmi
490 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -mbmi  conftest.cpp >&5
491 
+configure:6732: $? = 0
492 
+configure:6741: result: yes
493 
+configure:6678: checking whether BMI2 is supported by the processor
494 
+configure:6691: result: yes
495 
+configure:6695: checking whether BMI2 is supported by the processor and OS
496 
+configure:6708: result: yes
497 
+configure:6713: checking whether C++ compiler accepts -mbmi2
498 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -mbmi2  conftest.cpp >&5
499 
+configure:6732: $? = 0
500 
+configure:6741: result: yes
501 
+configure:6678: checking whether ADX is supported by the processor
502 
+configure:6691: result: yes
503 
+configure:6695: checking whether ADX is supported by the processor and OS
504 
+configure:6708: result: yes
505 
+configure:6713: checking whether C++ compiler accepts -madx
506 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -madx  conftest.cpp >&5
507 
+configure:6732: $? = 0
508 
+configure:6741: result: yes
509 
+configure:6678: checking whether MPX is supported by the processor
510 
+configure:6691: result: yes
511 
+configure:6695: checking whether MPX is supported by the processor and OS
512 
+configure:6708: result: yes
513 
+configure:6713: checking whether C++ compiler accepts -mmpx
514 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -mmpx  conftest.cpp >&5
515 
+configure:6732: $? = 0
516 
+configure:6741: result: yes
517 
+configure:6678: checking whether PREFETCHWT1 is supported by the processor
518 
+configure:6691: result: no
519 
+configure:6678: checking whether ABM is supported by the processor
520 
+configure:6691: result: yes
521 
+configure:6695: checking whether ABM is supported by the processor and OS
522 
+configure:6708: result: yes
523 
+configure:6713: checking whether C++ compiler accepts -mabm
524 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -mabm  conftest.cpp >&5
525 
+clang: error: unknown argument: '-mabm'
526 
+configure:6732: $? = 1
527 
+configure: failed program was:
528 
+| /* confdefs.h */
529 
+| #define PACKAGE_NAME "CoGAPS"
530 
+| #define PACKAGE_TARNAME "cogaps"
531 
+| #define PACKAGE_VERSION "3.1.3"
532 
+| #define PACKAGE_STRING "CoGAPS 3.1.3"
533 
+| #define PACKAGE_BUGREPORT ""
534 
+| #define PACKAGE_URL ""
535 
+| #define PACKAGE "cogaps"
536 
+| #define VERSION "3.1.3"
537 
+| #define HAVE_OPENMP 1
538 
+| #define HAVE_RDRND 1
539 
+| #define HAVE_BMI1 1
540 
+| #define HAVE_BMI2 1
541 
+| #define HAVE_ADX 1
542 
+| #define HAVE_MPX 1
543 
+| /* end confdefs.h.  */
544 
+|
545 
+| int
546 
+| main ()
547 
+| {
548 
+|
549 
+|   ;
550 
+|   return 0;
551 
+| }
552 
+configure:6741: result: no
553 
+configure:6756: WARNING: Your processor and OS supports ABM instructions but not your compiler, can you try another compiler?
554 
+configure:6678: checking whether MMX is supported by the processor
555 
+configure:6691: result: yes
556 
+configure:6695: checking whether MMX is supported by the processor and OS
557 
+configure:6708: result: yes
558 
+configure:6713: checking whether C++ compiler accepts -mmmx
559 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -mmmx  conftest.cpp >&5
560 
+configure:6732: $? = 0
561 
+configure:6741: result: yes
562 
+configure:6678: checking whether SSE is supported by the processor
563 
+configure:6691: result: yes
564 
+configure:6695: checking whether SSE is supported by the processor and OS
565 
+configure:6708: result: yes
566 
+configure:6713: checking whether C++ compiler accepts -msse
567 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -msse  conftest.cpp >&5
568 
+configure:6732: $? = 0
569 
+configure:6741: result: yes
570 
+configure:6678: checking whether SSE2 is supported by the processor
571 
+configure:6691: result: yes
572 
+configure:6695: checking whether SSE2 is supported by the processor and OS
573 
+configure:6708: result: yes
574 
+configure:6713: checking whether C++ compiler accepts -msse2
575 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -msse2  conftest.cpp >&5
576 
+configure:6732: $? = 0
577 
+configure:6741: result: yes
578 
+configure:6678: checking whether SSE3 is supported by the processor
579 
+configure:6691: result: yes
580 
+configure:6695: checking whether SSE3 is supported by the processor and OS
581 
+configure:6708: result: yes
582 
+configure:6713: checking whether C++ compiler accepts -msse3
583 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -msse3  conftest.cpp >&5
584 
+configure:6732: $? = 0
585 
+configure:6741: result: yes
586 
+configure:6678: checking whether SSSE3 is supported by the processor
587 
+configure:6691: result: yes
588 
+configure:6695: checking whether SSSE3 is supported by the processor and OS
589 
+configure:6708: result: yes
590 
+configure:6713: checking whether C++ compiler accepts -mssse3
591 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -mssse3  conftest.cpp >&5
592 
+configure:6732: $? = 0
593 
+configure:6741: result: yes
594 
+configure:6678: checking whether SSE4.1 is supported by the processor
595 
+configure:6691: result: yes
596 
+configure:6695: checking whether SSE4.1 is supported by the processor and OS
597 
+configure:6708: result: yes
598 
+configure:6713: checking whether C++ compiler accepts -msse4.1
599 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -msse4.1  conftest.cpp >&5
600 
+configure:6732: $? = 0
601 
+configure:6741: result: yes
602 
+configure:6678: checking whether SSE4.2 is supported by the processor
603 
+configure:6691: result: yes
604 
+configure:6695: checking whether SSE4.2 is supported by the processor and OS
605 
+configure:6708: result: yes
606 
+configure:6713: checking whether C++ compiler accepts -msse4.2
607 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -msse4.2  conftest.cpp >&5
608 
+configure:6732: $? = 0
609 
+configure:6741: result: yes
610 
+configure:6678: checking whether SSE4a is supported by the processor
611 
+configure:6691: result: no
612 
+configure:6678: checking whether SHA is supported by the processor
613 
+configure:6691: result: no
614 
+configure:6678: checking whether AES is supported by the processor
615 
+configure:6691: result: yes
616 
+configure:6695: checking whether AES is supported by the processor and OS
617 
+configure:6708: result: yes
618 
+configure:6713: checking whether C++ compiler accepts -maes
619 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -maes  conftest.cpp >&5
620 
+configure:6732: $? = 0
621 
+configure:6741: result: yes
622 
+configure:6678: checking whether AVX is supported by the processor
623 
+configure:6691: result: yes
624 
+configure:6695: checking whether AVX is supported by the processor and OS
625 
+configure:6708: result: yes
626 
+configure:6713: checking whether C++ compiler accepts -mavx
627 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -mavx  conftest.cpp >&5
628 
+configure:6732: $? = 0
629 
+configure:6741: result: yes
630 
+configure:6678: checking whether FMA3 is supported by the processor
631 
+configure:6691: result: yes
632 
+configure:6695: checking whether FMA3 is supported by the processor and OS
633 
+configure:6708: result: yes
634 
+configure:6713: checking whether C++ compiler accepts -mfma
635 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -mfma  conftest.cpp >&5
636 
+configure:6732: $? = 0
637 
+configure:6741: result: yes
638 
+configure:6678: checking whether FMA4 is supported by the processor
639 
+configure:6691: result: no
640 
+configure:6678: checking whether XOP is supported by the processor
641 
+configure:6691: result: no
642 
+configure:6678: checking whether AVX2 is supported by the processor
643 
+configure:6691: result: yes
644 
+configure:6695: checking whether AVX2 is supported by the processor and OS
645 
+configure:6708: result: yes
646 
+configure:6713: checking whether C++ compiler accepts -mavx2
647 
+configure:6732: ccache clang++ -c -UNDEBUG -Wall -pedantic -g -O0  -mavx2  conftest.cpp >&5
648 
+configure:6732: $? = 0
649 
+configure:6741: result: yes
650 
+configure:6678: checking whether AVX512-F is supported by the processor
651 
+configure:6691: result: no
652 
+configure:6678: checking whether AVX512-CD is supported by the processor
653 
+configure:6691: result: no
654 
+configure:6678: checking whether AVX512-PF is supported by the processor
655 
+configure:6691: result: no
656 
+configure:6678: checking whether AVX512-ER is supported by the processor
657 
+configure:6691: result: no
658 
+configure:6678: checking whether AVX512-VL is supported by the processor
659 
+configure:6691: result: no
660 
+configure:6678: checking whether AVX512-BW is supported by the processor
661 
+configure:6691: result: no
662 
+configure:6678: checking whether AVX512-DQ is supported by the processor
663 
+configure:6691: result: no
664 
+configure:6678: checking whether AVX512-IFMA is supported by the processor
665 
+configure:6691: result: no
666 
+configure:6678: checking whether AVX512-VBMI is supported by the processor
667 
+configure:6691: result: no
668 
+configure:7034: checking that generated files are newer than configure
669 
+configure:7040: result: done
670 
+configure:7071: creating ./config.status
671 
+
672 
+## ---------------------- ##
673 
+## Running config.status. ##
674 
+## ---------------------- ##
675 
+
676 
+This file was extended by CoGAPS config.status 3.1.3, which was
677 
+generated by GNU Autoconf 2.69.  Invocation command line was
678 
+
679 
+  CONFIG_FILES    =
680 
+  CONFIG_HEADERS  =
681 
+  CONFIG_LINKS    =
682 
+  CONFIG_COMMANDS =
683 
+  $ ./config.status
684 
+
685 
+on MBL-D518NN2
686 
+
687 
+config.status:795: creating src/Makevars
688 
+config.status:967: executing depfiles commands
689 
+
690 
+## ---------------- ##
691 
+## Cache variables. ##
692 
+## ---------------- ##
693 
+
694 
+ac_cv_build=x86_64-pc-linux-gnu
695 
+ac_cv_c_compiler_gnu=yes
696 
+ac_cv_cxx_compiler_gnu=yes
697 
+ac_cv_env_CCC_set=
698 
+ac_cv_env_CCC_value=
699 
+ac_cv_env_CC_set=
700 
+ac_cv_env_CC_value=
701 
+ac_cv_env_CFLAGS_set=set
702 
+ac_cv_env_CFLAGS_value='-UNDEBUG -Wall -pedantic -g -O0'
703 
+ac_cv_env_CPPFLAGS_set=
704 
+ac_cv_env_CPPFLAGS_value=
705 
+ac_cv_env_CXXCPP_set=
706 
+ac_cv_env_CXXCPP_value=
707 
+ac_cv_env_CXXFLAGS_set=set
708 
+ac_cv_env_CXXFLAGS_value='-UNDEBUG -Wall -pedantic -g -O0'
709 
+ac_cv_env_CXX_set=
710 
+ac_cv_env_CXX_value=
711 
+ac_cv_env_LDFLAGS_set=
712 
+ac_cv_env_LDFLAGS_value=
713 
+ac_cv_env_LIBS_set=
714 
+ac_cv_env_LIBS_value=
715 
+ac_cv_env_build_alias_set=
716 
+ac_cv_env_build_alias_value=
717 
+ac_cv_env_host_alias_set=
718 
+ac_cv_env_host_alias_value=
719 
+ac_cv_env_target_alias_set=
720 
+ac_cv_env_target_alias_value=
721 
+ac_cv_host=x86_64-pc-linux-gnu
722 
+ac_cv_objext=o
723 
+ac_cv_path_SED=/bin/sed
724 
+ac_cv_path_install='/usr/bin/install -c'
725 
+ac_cv_path_mkdir=/bin/mkdir
726 
+ac_cv_prog_AWK=gawk
727 
+ac_cv_prog_CXXCPP='ccache clang++ -E'
728 
+ac_cv_prog_ac_ct_CC=gcc
729 
+ac_cv_prog_cc_c89=
730 
+ac_cv_prog_cc_g=yes
731 
+ac_cv_prog_cxx_g=yes
732 
+ac_cv_prog_make_make_set=yes
733 
+am_cv_CC_dependencies_compiler_type=none
734 
+am_cv_CXX_dependencies_compiler_type=none
735 
+am_cv_make_support_nested_variables=yes
736 
+am_cv_prog_cc_c_o=yes
737 
+ax_cv_check_cxxflags___mabm=no
738 
+ax_cv_check_cxxflags___madx=yes
739 
+ax_cv_check_cxxflags___maes=yes
740 
+ax_cv_check_cxxflags___mavx2=yes
741 
+ax_cv_check_cxxflags___mavx=yes
742 
+ax_cv_check_cxxflags___mbmi2=yes
743 
+ax_cv_check_cxxflags___mbmi=yes
744 
+ax_cv_check_cxxflags___mfma=yes
745 
+ax_cv_check_cxxflags___mmmx=yes
746 
+ax_cv_check_cxxflags___mmpx=yes
747 
+ax_cv_check_cxxflags___mrdrnd=yes
748 
+ax_cv_check_cxxflags___msse2=yes
749 
+ax_cv_check_cxxflags___msse3=yes
750 
+ax_cv_check_cxxflags___msse4_1=yes
751 
+ax_cv_check_cxxflags___msse4_2=yes
752 
+ax_cv_check_cxxflags___msse=yes
753 
+ax_cv_check_cxxflags___mssse3=yes
754 
+ax_cv_cxx_compiler_vendor=clang
755 
+ax_cv_cxx_compiler_version=5.0.0
756 
+ax_cv_cxx_openmp=-fopenmp
757 
+ax_cv_gcc_x86_avx_xgetbv_0x00000000=1f:0
758 
+ax_cv_gcc_x86_avx_xgetbv_=unknown
759 
+ax_cv_gcc_x86_cpuid_0x00000000=16:756e6547:6c65746e:49656e69
760 
+ax_cv_gcc_x86_cpuid_0x00000001=806ea:7100800:7ffafbff:bfebfbff
761 
+ax_cv_gcc_x86_cpuid_0x00000007=0:29c6fbf:0:0
762 
+ax_cv_gcc_x86_cpuid_0x80000000=80000008:0:0:0
763 
+ax_cv_gcc_x86_cpuid_0x80000001=0:0:121:2c100800
764 
+ax_cv_gcc_x86_cpuid_=unknown
765 
+ax_cv_have_abm_cpu_ext=yes
766 
+ax_cv_have_abm_ext=yes
767 
+ax_cv_have_adx_cpu_ext=yes
768 
+ax_cv_have_adx_ext=yes
769 
+ax_cv_have_aes_cpu_ext=yes
770 
+ax_cv_have_aes_ext=yes
771 
+ax_cv_have_avx2_cpu_ext=yes
772 
+ax_cv_have_avx2_ext=yes
773 
+ax_cv_have_avx512_os_support_ext=no
774 
+ax_cv_have_avx512bw_cpu_ext=no
775 
+ax_cv_have_avx512bw_ext=no
776 
+ax_cv_have_avx512cd_cpu_ext=no
777 
+ax_cv_have_avx512cd_ext=no
778 
+ax_cv_have_avx512dq_cpu_ext=no
779 
+ax_cv_have_avx512dq_ext=no
780 
+ax_cv_have_avx512er_cpu_ext=no
781 
+ax_cv_have_avx512er_ext=no
782 
+ax_cv_have_avx512f_cpu_ext=no
783 
+ax_cv_have_avx512f_ext=no
784 
+ax_cv_have_avx512ifma_cpu_ext=no
785 
+ax_cv_have_avx512ifma_ext=no
786 
+ax_cv_have_avx512pf_cpu_ext=no
787 
+ax_cv_have_avx512pf_ext=no
788 
+ax_cv_have_avx512vbmi_cpu_ext=no
789 
+ax_cv_have_avx512vbmi_ext=no
790 
+ax_cv_have_avx512vl_cpu_ext=no
791 
+ax_cv_have_avx512vl_ext=no
792 
+ax_cv_have_avx_cpu_ext=yes
793 
+ax_cv_have_avx_ext=yes
794 
+ax_cv_have_avx_os_support_ext=yes
795 
+ax_cv_have_bmi1_cpu_ext=yes
796 
+ax_cv_have_bmi1_ext=yes
797 
+ax_cv_have_bmi2_cpu_ext=yes
798 
+ax_cv_have_bmi2_ext=yes
799 
+ax_cv_have_fma3_cpu_ext=yes
800 
+ax_cv_have_fma3_ext=yes
801 
+ax_cv_have_fma4_cpu_ext=no
802 
+ax_cv_have_fma4_ext=no
803 
+ax_cv_have_mmx_cpu_ext=yes
804 
+ax_cv_have_mmx_ext=yes
805 
+ax_cv_have_mmx_os_support_ext=yes
806 
+ax_cv_have_mpx_cpu_ext=yes
807 
+ax_cv_have_mpx_ext=yes
808 
+ax_cv_have_none_os_support_ext=yes
809 
+ax_cv_have_prefetchwt1_cpu_ext=no
810 
+ax_cv_have_prefetchwt1_ext=no
811 
+ax_cv_have_rdrnd_cpu_ext=yes
812 
+ax_cv_have_rdrnd_ext=yes
813 
+ax_cv_have_sha_cpu_ext=no
814 
+ax_cv_have_sha_ext=no
815 
+ax_cv_have_sse2_cpu_ext=yes
816 
+ax_cv_have_sse2_ext=yes
817 
+ax_cv_have_sse3_cpu_ext=yes
818 
+ax_cv_have_sse3_ext=yes
819 
+ax_cv_have_sse41_cpu_ext=yes
820 
+ax_cv_have_sse41_ext=yes
821 
+ax_cv_have_sse42_cpu_ext=yes
822 
+ax_cv_have_sse42_ext=yes
823 
+ax_cv_have_sse4a_cpu_ext=no
824 
+ax_cv_have_sse4a_ext=no
825 
+ax_cv_have_sse_cpu_ext=yes
826 
+ax_cv_have_sse_ext=yes
827 
+ax_cv_have_sse_os_support_ext=yes
828 
+ax_cv_have_ssse3_cpu_ext=yes
829 
+ax_cv_have_ssse3_ext=yes
830 
+ax_cv_have_xop_cpu_ext=no
831 
+ax_cv_have_xop_ext=no
832 
+ax_cv_support_abm_ext=no
833 
+ax_cv_support_adx_ext=yes
834 
+ax_cv_support_aes_ext=yes
835 
+ax_cv_support_avx2_ext=yes
836 
+ax_cv_support_avx512bw_ext=no
837 
+ax_cv_support_avx512cd_ext=no
838 
+ax_cv_support_avx512dq_ext=no
839 
+ax_cv_support_avx512er_ext=no
840 
+ax_cv_support_avx512f_ext=no
841 
+ax_cv_support_avx512ifma_ext=no
842 
+ax_cv_support_avx512pf_ext=no
843 
+ax_cv_support_avx512vbmi_ext=no
844 
+ax_cv_support_avx512vl_ext=no
845 
+ax_cv_support_avx_ext=yes
846 
+ax_cv_support_bmi1_ext=yes
847 
+ax_cv_support_bmi2_ext=yes
848 
+ax_cv_support_fma3_ext=yes
849 
+ax_cv_support_fma4_ext=no
850 
+ax_cv_support_mmx_ext=yes
851 
+ax_cv_support_mpx_ext=yes
852 
+ax_cv_support_prefetchwt1_ext=no
853 
+ax_cv_support_rdrnd_ext=yes
854 
+ax_cv_support_sha_ext=no
855 
+ax_cv_support_sse2_ext=yes
856 
+ax_cv_support_sse3_ext=yes
857 
+ax_cv_support_sse41_ext=yes
858 
+ax_cv_support_sse42_ext=yes
859 
+ax_cv_support_sse4a_ext=no
860 
+ax_cv_support_sse_ext=yes
861 
+ax_cv_support_ssse3_ext=yes
862 
+ax_cv_support_xop_ext=no
863 
+
864 
+## ----------------- ##
865 
+## Output variables. ##
866 
+## ----------------- ##
867 
+
868 
+ACLOCAL='${SHELL} /mnt/c/Users/tsherma4/Documents/CoGAPS/R_Package/missing aclocal-1.15'
869 
+AMDEPBACKSLASH='\'
870 
+AMDEP_FALSE='#'
871 
+AMDEP_TRUE=''
872 
+AMTAR='$${TAR-tar}'
873 
+AM_BACKSLASH='\'
874 
+AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
875 
+AM_DEFAULT_VERBOSITY='1'
876 
+AM_V='$(V)'
877 
+AUTOCONF='${SHELL} /mnt/c/Users/tsherma4/Documents/CoGAPS/R_Package/missing autoconf'
878 
+AUTOHEADER='${SHELL} /mnt/c/Users/tsherma4/Documents/CoGAPS/R_Package/missing autoheader'
879 
+AUTOMAKE='${SHELL} /mnt/c/Users/tsherma4/Documents/CoGAPS/R_Package/missing automake-1.15'
880 
+AWK='gawk'
881 
+CC='gcc'
882 
+CCDEPMODE='depmode=none'
883 
+CFLAGS='-UNDEBUG -Wall -pedantic -g -O0'
884 
+CPPFLAGS=''
885 
+CPUEXT_FLAGS=' -mrdrnd -mbmi -mbmi2 -madx -mmpx'
886 
+CXX='ccache clang++'
887 
+CXXCPP='ccache clang++ -E'
888 
+CXXDEPMODE='depmode=none'
889 
+CXXFLAGS='-UNDEBUG -Wall -pedantic -g -O0'
890 
+CYGPATH_W='echo'
891 
+DEFS='-DPACKAGE_NAME=\"CoGAPS\" -DPACKAGE_TARNAME=\"cogaps\" -DPACKAGE_VERSION=\"3.1.3\" -DPACKAGE_STRING=\"CoGAPS\ 3.1.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"cogaps\" -DVERSION=\"3.1.3\" -DHAVE_OPENMP=1 -DHAVE_RDRND=1 -DHAVE_BMI1=1 -DHAVE_BMI2=1 -DHAVE_ADX=1 -DHAVE_MPX=1 -DHAVE_MMX=1 -DHAVE_SSE=1 -DHAVE_SSE2=1 -DHAVE_SSE3=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AES=1 -DHAVE_AVX=1 -DHAVE_FMA3=1 -DHAVE_AVX2=1'
892 
+DEPDIR='.deps'
893 
+ECHO_C=''
894 
+ECHO_N='-n'
895 
+ECHO_T=''
896 
+EXEEXT=''
897 
+GAPS_CPP_FLAGS=' -DBOOST_MATH_PROMOTE_DOUBLE_POLICY=0 -D__GAPS_R_BUILD__ '
898 
+GAPS_CXX_FLAGS=' -fopenmp  -mavx '
899 
+GAPS_LIBS=' -fopenmp '
900 
+INSTALL_DATA='${INSTALL} -m 644'
901 
+INSTALL_PROGRAM='${INSTALL}'
902 
+INSTALL_SCRIPT='${INSTALL}'
903 
+INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
904 
+LDFLAGS=''
905 
+LIBOBJS=''
906 
+LIBS=''
907 
+LTLIBOBJS=''
908 
+MAKEINFO='${SHELL} /mnt/c/Users/tsherma4/Documents/CoGAPS/R_Package/missing makeinfo'
909 
+MKDIR_P='/bin/mkdir -p'
910 
+OBJEXT='o'
911 
+PACKAGE='cogaps'
912 
+PACKAGE_BUGREPORT=''
913 
+PACKAGE_NAME='CoGAPS'
914 
+PACKAGE_STRING='CoGAPS 3.1.3'
915 
+PACKAGE_TARNAME='cogaps'
916 
+PACKAGE_URL=''
917 
+PACKAGE_VERSION='3.1.3'
918 
+PATH_SEPARATOR=':'
919 
+SED='/bin/sed'
920 
+SET_MAKE=''
921 
+SHELL='/bin/bash'
922 
+SIMD_FLAGS=' -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2'
923 
+STRIP=''
924 
+VERSION='3.1.3'
925 
+ac_ct_CC='gcc'
926 
+ac_ct_CXX=''
927 
+am__EXEEXT_FALSE=''
928 
+am__EXEEXT_TRUE='#'
929 
+am__fastdepCC_FALSE=''
930 
+am__fastdepCC_TRUE='#'
931 
+am__fastdepCXX_FALSE=''
932 
+am__fastdepCXX_TRUE='#'
933 
+am__include='include'
934 
+am__isrc=''
935 
+am__leading_dot='.'
936 
+am__nodep='_no'
937 
+am__quote=''
938 
+am__tar='$${TAR-tar} chof - "$$tardir"'
939 
+am__untar='$${TAR-tar} xf -'
940 
+bindir='${exec_prefix}/bin'
941 
+build='x86_64-pc-linux-gnu'
942 
+build_alias=''
943 
+build_cpu='x86_64'
944 
+build_os='linux-gnu'
945 
+build_vendor='pc'
946 
+datadir='${datarootdir}'
947 
+datarootdir='${prefix}/share'
948 
+docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
949 
+dvidir='${docdir}'
950 
+exec_prefix='${prefix}'
951 
+host='x86_64-pc-linux-gnu'
952 
+host_alias=''
953 
+host_cpu='x86_64'
954 
+host_os='linux-gnu'
955 
+host_vendor='pc'
956 
+htmldir='${docdir}'
957 
+includedir='${prefix}/include'
958 
+infodir='${datarootdir}/info'
959 
+install_sh='${SHELL} /mnt/c/Users/tsherma4/Documents/CoGAPS/R_Package/install-sh'
960 
+libdir='${exec_prefix}/lib'
961 
+libexecdir='${exec_prefix}/libexec'
962 
+localedir='${datarootdir}/locale'
963 
+localstatedir='${prefix}/var'
964 
+mandir='${datarootdir}/man'
965 
+mkdir_p='$(MKDIR_P)'
966 
+oldincludedir='/usr/include'
967 
+pdfdir='${docdir}'
968 
+prefix='/usr/local'
969 
+program_transform_name='s,x,x,'
970 
+psdir='${docdir}'
971 
+runstatedir='${localstatedir}/run'
972 
+sbindir='${exec_prefix}/sbin'
973 
+sharedstatedir='${prefix}/com'
974 
+sysconfdir='${prefix}/etc'
975 
+target_alias=''
976 
+
977 
+## ----------- ##
978 
+## confdefs.h. ##
979 
+## ----------- ##
980 
+
981 
+/* confdefs.h */
982 
+#define PACKAGE_NAME "CoGAPS"
983 
+#define PACKAGE_TARNAME "cogaps"
984 
+#define PACKAGE_VERSION "3.1.3"
985 
+#define PACKAGE_STRING "CoGAPS 3.1.3"
986 
+#define PACKAGE_BUGREPORT ""
987 
+#define PACKAGE_URL ""
988 
+#define PACKAGE "cogaps"
989 
+#define VERSION "3.1.3"
990 
+#define HAVE_OPENMP 1
991 
+#define HAVE_RDRND 1
992 
+#define HAVE_BMI1 1
993 
+#define HAVE_BMI2 1
994 
+#define HAVE_ADX 1
995 
+#define HAVE_MPX 1
996 
+#define HAVE_MMX 1
997 
+#define HAVE_SSE 1
998 
+#define HAVE_SSE2 1
999 
+#define HAVE_SSE3 1
1000 
+#define HAVE_SSSE3 1
1001 
+#define HAVE_SSE4_1 1
1002 
+#define HAVE_SSE4_2 1
1003 
+#define HAVE_AES 1
1004 
+#define HAVE_AVX 1
1005 
+#define HAVE_FMA3 1
1006 
+#define HAVE_AVX2 1
1007 
+
1008 
+configure: exit 0
config.status
History View file @ c94aa80ef
0 1009 
new file mode 100644
... ... 
@@ -0,0 +1,1072 @@
1 
+#! /bin/bash
2 
+# Generated by configure.
3 
+# Run this file to recreate the current configuration.
4 
+# Compiler output produced by configure, useful for debugging
5 
+# configure, is in config.log if it exists.
6 
+
7 
+debug=false
8 
+ac_cs_recheck=false
9 
+ac_cs_silent=false
10 
+
11 
+SHELL=${CONFIG_SHELL-/bin/bash}
12 
+export SHELL
13 
+## -------------------- ##
14 
+## M4sh Initialization. ##
15 
+## -------------------- ##
16 
+
17 
+# Be more Bourne compatible
18 
+DUALCASE=1; export DUALCASE # for MKS sh
19 
+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then :
20 
+  emulate sh
21 
+  NULLCMD=:
22 
+  # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
23 
+  # is contrary to our usage.  Disable this feature.
24 
+  alias -g '${1+"$@"}'='"$@"'
25 
+  setopt NO_GLOB_SUBST
26 
+else
27 
+  case `(set -o) 2>/dev/null` in #(
28 
+  *posix*) :
29 
+    set -o posix ;; #(
30 
+  *) :
31 
+     ;;
32 
+esac
33 
+fi
34 
+
35 
+
36 
+as_nl='
37 
+'
38 
+export as_nl
39 
+# Printing a long string crashes Solaris 7 /usr/bin/printf.
40 
+as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
41 
+as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
42 
+as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
43 
+# Prefer a ksh shell builtin over an external printf program on Solaris,
44 
+# but without wasting forks for bash or zsh.
45 
+if test -z "$BASH_VERSION$ZSH_VERSION" \
46 
+    && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
47 
+  as_echo='print -r --'
48 
+  as_echo_n='print -rn --'
49 
+elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
50 
+  as_echo='printf %s\n'
51 
+  as_echo_n='printf %s'
52 
+else
53 
+  if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
54 
+    as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
55 
+    as_echo_n='/usr/ucb/echo -n'
56 
+  else
57 
+    as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
58 
+    as_echo_n_body='eval
59 
+      arg=$1;
60 
+      case $arg in #(
61 
+      *"$as_nl"*)
62 
+	expr "X$arg" : "X\\(.*\\)$as_nl";
63 
+	arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
64 
+      esac;
65 
+      expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
66 
+    '
67 
+    export as_echo_n_body
68 
+    as_echo_n='sh -c $as_echo_n_body as_echo'
69 
+  fi
70 
+  export as_echo_body
71 
+  as_echo='sh -c $as_echo_body as_echo'
72 
+fi
73 
+
74 
+# The user is always right.
75 
+if test "${PATH_SEPARATOR+set}" != set; then
76 
+  PATH_SEPARATOR=:
77 
+  (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && {
78 
+    (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 ||
79 
+      PATH_SEPARATOR=';'
80 
+  }
81 
+fi
82 
+
83 
+
84 
+# IFS
85 
+# We need space, tab and new line, in precisely that order.  Quoting is
86 
+# there to prevent editors from complaining about space-tab.
87 
+# (If _AS_PATH_WALK were called with IFS unset, it would disable word
88 
+# splitting by setting IFS to empty value.)
89 
+IFS=" ""	$as_nl"
90 
+
91 
+# Find who we are.  Look in the path if we contain no directory separator.
92 
+as_myself=
93 
+case $0 in #((
94 
+  *[\\/]* ) as_myself=$0 ;;
95 
+  *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
96 
+for as_dir in $PATH
97 
+do
98 
+  IFS=$as_save_IFS
99 
+  test -z "$as_dir" && as_dir=.
100 
+    test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
101 
+  done
102 
+IFS=$as_save_IFS
103 
+
104 
+     ;;
105 
+esac
106 
+# We did not find ourselves, most probably we were run as `sh COMMAND'
107 
+# in which case we are not to be found in the path.
108 
+if test "x$as_myself" = x; then
109 
+  as_myself=$0
110 
+fi
111 
+if test ! -f "$as_myself"; then
112 
+  $as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
113 
+  exit 1
114 
+fi
115 
+
116 
+# Unset variables that we do not need and which cause bugs (e.g. in
117 
+# pre-3.0 UWIN ksh).  But do not cause bugs in bash 2.01; the "|| exit 1"
118 
+# suppresses any "Segmentation fault" message there.  '((' could
119 
+# trigger a bug in pdksh 5.2.14.
120 
+for as_var in BASH_ENV ENV MAIL MAILPATH
121 
+do eval test x\${$as_var+set} = xset \
122 
+  && ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || :
123 
+done
124 
+PS1='$ '
125 
+PS2='> '
126 
+PS4='+ '
127 
+
128 
+# NLS nuisances.
129 
+LC_ALL=C
130 
+export LC_ALL
131 
+LANGUAGE=C
132 
+export LANGUAGE
133 
+
134 
+# CDPATH.
135 
+(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
136 
+
137 
+
138 
+# as_fn_error STATUS ERROR [LINENO LOG_FD]
139 
+# ----------------------------------------
140 
+# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
141 
+# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
142 
+# script with STATUS, using 1 if that was 0.
143 
+as_fn_error ()
144 
+{
145 
+  as_status=$1; test $as_status -eq 0 && as_status=1
146 
+  if test "$4"; then
147 
+    as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
148 
+    $as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
149 
+  fi
150 
+  $as_echo "$as_me: error: $2" >&2
151 
+  as_fn_exit $as_status
152 
+} # as_fn_error
153 
+
154 
+
155 
+# as_fn_set_status STATUS
156 
+# -----------------------
157 
+# Set $? to STATUS, without forking.
158 
+as_fn_set_status ()
159 
+{
160 
+  return $1
161 
+} # as_fn_set_status
162 
+
163 
+# as_fn_exit STATUS
164 
+# -----------------
165 
+# Exit the shell with STATUS, even in a "trap 0" or "set -e" context.
166 
+as_fn_exit ()
167 
+{
168 
+  set +e
169 
+  as_fn_set_status $1
170 
+  exit $1
171 
+} # as_fn_exit
172 
+
173 
+# as_fn_unset VAR
174 
+# ---------------
175 
+# Portably unset VAR.
176 
+as_fn_unset ()
177 
+{
178 
+  { eval $1=; unset $1;}
179 
+}
180 
+as_unset=as_fn_unset
181 
+# as_fn_append VAR VALUE
182 
+# ----------------------
183 
+# Append the text in VALUE to the end of the definition contained in VAR. Take
184 
+# advantage of any shell optimizations that allow amortized linear growth over
185 
+# repeated appends, instead of the typical quadratic growth present in naive
186 
+# implementations.
187 
+if (eval "as_var=1; as_var+=2; test x\$as_var = x12") 2>/dev/null; then :
188 
+  eval 'as_fn_append ()
189 
+  {
190 
+    eval $1+=\$2
191 
+  }'
192 
+else
193 
+  as_fn_append ()
194 
+  {
195 
+    eval $1=\$$1\$2
196 
+  }
197 
+fi # as_fn_append
198 
+
199 
+# as_fn_arith ARG...
200 
+# ------------------
201 
+# Perform arithmetic evaluation on the ARGs, and store the result in the
202 
+# global $as_val. Take advantage of shells that can avoid forks. The arguments
203 
+# must be portable across $(()) and expr.
204 
+if (eval "test \$(( 1 + 1 )) = 2") 2>/dev/null; then :
205 
+  eval 'as_fn_arith ()
206 
+  {
207 
+    as_val=$(( $* ))
208 
+  }'
209 
+else
210 
+  as_fn_arith ()
211 
+  {
212 
+    as_val=`expr "$@" || test $? -eq 1`
213 
+  }
214 
+fi # as_fn_arith
215 
+
216 
+
217 
+if expr a : '\(a\)' >/dev/null 2>&1 &&
218 
+   test "X`expr 00001 : '.*\(...\)'`" = X001; then
219 
+  as_expr=expr
220 
+else
221 
+  as_expr=false
222 
+fi
223 
+
224 
+if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
225 
+  as_basename=basename
226 
+else
227 
+  as_basename=false
228 
+fi
229 
+
230 
+if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
231 
+  as_dirname=dirname
232 
+else
233 
+  as_dirname=false
234 
+fi
235 
+
236 
+as_me=`$as_basename -- "$0" ||
237 
+$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
238 
+	 X"$0" : 'X\(//\)$' \| \
239 
+	 X"$0" : 'X\(/\)' \| . 2>/dev/null ||
240 
+$as_echo X/"$0" |
241 
+    sed '/^.*\/\([^/][^/]*\)\/*$/{
242 
+	    s//\1/
243 
+	    q
244 
+	  }
245 
+	  /^X\/\(\/\/\)$/{
246 
+	    s//\1/
247 
+	    q
248 
+	  }
249 
+	  /^X\/\(\/\).*/{
250 
+	    s//\1/
251 
+	    q
252 
+	  }
253 
+	  s/.*/./; q'`
254 
+
255 
+# Avoid depending upon Character Ranges.
256 
+as_cr_letters='abcdefghijklmnopqrstuvwxyz'
257 
+as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
258 
+as_cr_Letters=$as_cr_letters$as_cr_LETTERS
259 
+as_cr_digits='0123456789'
260 
+as_cr_alnum=$as_cr_Letters$as_cr_digits
261 
+
262 
+ECHO_C= ECHO_N= ECHO_T=
263 
+case `echo -n x` in #(((((
264 
+-n*)
265 
+  case `echo 'xy\c'` in
266 
+  *c*) ECHO_T='	';;	# ECHO_T is single tab character.
267 
+  xy)  ECHO_C='\c';;
268 
+  *)   echo `echo ksh88 bug on AIX 6.1` > /dev/null
269 
+       ECHO_T='	';;
270 
+  esac;;
271 
+*)
272 
+  ECHO_N='-n';;
273 
+esac
274 
+
275 
+rm -f conf$$ conf$$.exe conf$$.file
276 
+if test -d conf$$.dir; then
277 
+  rm -f conf$$.dir/conf$$.file
278 
+else
279 
+  rm -f conf$$.dir
280 
+  mkdir conf$$.dir 2>/dev/null
281 
+fi
282 
+if (echo >conf$$.file) 2>/dev/null; then
283 
+  if ln -s conf$$.file conf$$ 2>/dev/null; then
284 
+    as_ln_s='ln -s'
285 
+    # ... but there are two gotchas:
286 
+    # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
287 
+    # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
288 
+    # In both cases, we have to default to `cp -pR'.
289 
+    ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
290 
+      as_ln_s='cp -pR'
291 
+  elif ln conf$$.file conf$$ 2>/dev/null; then
292 
+    as_ln_s=ln
293 
+  else
294 
+    as_ln_s='cp -pR'
295 
+  fi
296 
+else
297 
+  as_ln_s='cp -pR'
298 
+fi
299 
+rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
300 
+rmdir conf$$.dir 2>/dev/null
301 
+
302 
+
303 
+# as_fn_mkdir_p
304 
+# -------------
305 
+# Create "$as_dir" as a directory, including parents if necessary.
306 
+as_fn_mkdir_p ()
307 
+{
308 
+
309 
+  case $as_dir in #(
310 
+  -*) as_dir=./$as_dir;;
311 
+  esac
312 
+  test -d "$as_dir" || eval $as_mkdir_p || {
313 
+    as_dirs=
314 
+    while :; do
315 
+      case $as_dir in #(
316 
+      *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
317 
+      *) as_qdir=$as_dir;;
318 
+      esac
319 
+      as_dirs="'$as_qdir' $as_dirs"
320 
+      as_dir=`$as_dirname -- "$as_dir" ||
321 
+$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
322 
+	 X"$as_dir" : 'X\(//\)[^/]' \| \
323 
+	 X"$as_dir" : 'X\(//\)$' \| \
324 
+	 X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
325 
+$as_echo X"$as_dir" |
326 
+    sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
327 
+	    s//\1/
328 
+	    q
329 
+	  }
330 
+	  /^X\(\/\/\)[^/].*/{
331 
+	    s//\1/
332 
+	    q
333 
+	  }
334 
+	  /^X\(\/\/\)$/{
335 
+	    s//\1/
336 
+	    q
337 
+	  }
338 
+	  /^X\(\/\).*/{
339 
+	    s//\1/
340 
+	    q
341 
+	  }
342 
+	  s/.*/./; q'`
343 
+      test -d "$as_dir" && break
344 
+    done
345 
+    test -z "$as_dirs" || eval "mkdir $as_dirs"
346 
+  } || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir"
347 
+
348 
+
349 
+} # as_fn_mkdir_p
350 
+if mkdir -p . 2>/dev/null; then
351 
+  as_mkdir_p='mkdir -p "$as_dir"'
352 
+else
353 
+  test -d ./-p && rmdir ./-p
354 
+  as_mkdir_p=false
355 
+fi
356 
+
357 
+
358 
+# as_fn_executable_p FILE
359 
+# -----------------------
360 
+# Test if FILE is an executable regular file.
361 
+as_fn_executable_p ()
362 
+{
363 
+  test -f "$1" && test -x "$1"
364 
+} # as_fn_executable_p
365 
+as_test_x='test -x'
366 
+as_executable_p=as_fn_executable_p
367 
+
368 
+# Sed expression to map a string onto a valid CPP name.
369 
+as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
370 
+
371 
+# Sed expression to map a string onto a valid variable name.
372 
+as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
373 
+
374 
+
375 
+exec 6>&1
376 
+## ----------------------------------- ##
377 
+## Main body of $CONFIG_STATUS script. ##
378 
+## ----------------------------------- ##
379 
+# Save the log message, to keep $0 and so on meaningful, and to
380 
+# report actual input values of CONFIG_FILES etc. instead of their
381 
+# values after options handling.
382 
+ac_log="
383 
+This file was extended by CoGAPS $as_me 3.1.3, which was
384 
+generated by GNU Autoconf 2.69.  Invocation command line was
385 
+
386 
+  CONFIG_FILES    = $CONFIG_FILES
387 
+  CONFIG_HEADERS  = $CONFIG_HEADERS
388