@@ -16,7 +16,7 @@ install.packages("BiocManager")

 BiocManager::install("CoGAPS")

 ```

-The most up-to-date version of *CoGAPS* can be installed directly from the 

+The most up-to-date version of *CoGAPS* can be installed directly from the

 *FertigLab* Github Repository:

 ```

@@ -1,6 +1,6 @@

 #! /bin/sh

 # Guess values for system-dependent variables and create Makefiles.

-# Generated by GNU Autoconf 2.69 for CoGAPS 3.5.13.

+# Generated by GNU Autoconf 2.69 for CoGAPS 3.9.1.

 #

 #

 # Copyright (C) 1992-1996, 1998-2012 Free Software Foundation, Inc.

@@ -195,8 +195,7 @@ test -x / || exit 1"

   as_suggested="  as_lineno_1=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_1a=\$LINENO

   as_lineno_2=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_2a=\$LINENO

   eval 'test \"x\$as_lineno_1'\$as_run'\" != \"x\$as_lineno_2'\$as_run'\" &&

-  test \"x\`expr \$as_lineno_1'\$as_run' + 1\`\" = \"x\$as_lineno_2'\$as_run'\"' || exit 1

-test \$(( 1 + 1 )) = 2 || exit 1"

+  test \"x\`expr \$as_lineno_1'\$as_run' + 1\`\" = \"x\$as_lineno_2'\$as_run'\"' || exit 1"

   if (eval "$as_required") 2>/dev/null; then :

   as_have_required=yes

 else

@@ -577,8 +576,8 @@ MAKEFLAGS=

 # Identity of this package.

 PACKAGE_NAME='CoGAPS'

 PACKAGE_TARNAME='cogaps'

-PACKAGE_VERSION='3.5.13'

-PACKAGE_STRING='CoGAPS 3.5.13'

+PACKAGE_VERSION='3.9.1'

+PACKAGE_STRING='CoGAPS 3.9.1'

 PACKAGE_BUGREPORT=''

 PACKAGE_URL=''

@@ -588,7 +587,6 @@ GAPS_SOURCE_FILES

 GAPS_LIBS

 GAPS_CXX_FLAGS

 GAPS_CPP_FLAGS

-SED

 CXXCPP

 OBJEXT

 EXEEXT

@@ -1205,7 +1203,7 @@ if test "$ac_init_help" = "long"; then

   # Omit some internal or obsolete options to make the list less imposing.

   # This message is too long to be a string in the A/UX 3.1 sh.

   cat <<_ACEOF

-\`configure' configures CoGAPS 3.5.13 to adapt to many kinds of systems.

+\`configure' configures CoGAPS 3.9.1 to adapt to many kinds of systems.

 Usage: $0 [OPTION]... [VAR=VALUE]...

@@ -1267,7 +1265,7 @@ fi

 if test -n "$ac_init_help"; then

   case $ac_init_help in

-     short | recursive ) echo "Configuration of CoGAPS 3.5.13:";;

+     short | recursive ) echo "Configuration of CoGAPS 3.9.1:";;

    esac

   cat <<\_ACEOF

@@ -1357,7 +1355,7 @@ fi

 test -n "$ac_init_help" && exit $ac_status

 if $ac_init_version; then

   cat <<\_ACEOF

-CoGAPS configure 3.5.13

+CoGAPS configure 3.9.1

 generated by GNU Autoconf 2.69

 Copyright (C) 2012 Free Software Foundation, Inc.

@@ -1445,282 +1443,11 @@ fi

   as_fn_set_status $ac_retval

 } # ac_fn_cxx_try_cpp

-

-# ac_fn_cxx_try_run LINENO

-# ------------------------

-# Try to link conftest.$ac_ext, and return whether this succeeded. Assumes

-# that executables *can* be run.

-ac_fn_cxx_try_run ()

-{

-  as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack

-  if { { ac_try="$ac_link"

-case "(($ac_try" in

-  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;

-  *) ac_try_echo=$ac_try;;

-esac

-eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""

-$as_echo "$ac_try_echo"; } >&5

-  (eval "$ac_link") 2>&5

-  ac_status=$?

-  $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5

-  test $ac_status = 0; } && { ac_try='./conftest$ac_exeext'

-  { { case "(($ac_try" in

-  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;

-  *) ac_try_echo=$ac_try;;

-esac

-eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""

-$as_echo "$ac_try_echo"; } >&5

-  (eval "$ac_try") 2>&5

-  ac_status=$?

-  $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5

-  test $ac_status = 0; }; }; then :

-  ac_retval=0

-else

-  $as_echo "$as_me: program exited with status $ac_status" >&5

-       $as_echo "$as_me: failed program was:" >&5

-sed 's/^/| /' conftest.$ac_ext >&5

-

-       ac_retval=$ac_status

-fi

-  rm -rf conftest.dSYM conftest_ipa8_conftest.oo

-  eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno

-  as_fn_set_status $ac_retval

-

-} # ac_fn_cxx_try_run

-

-# ac_fn_cxx_compute_int LINENO EXPR VAR INCLUDES

-# ----------------------------------------------

-# Tries to find the compile-time value of EXPR in a program that includes

-# INCLUDES, setting VAR accordingly. Returns whether the value could be

-# computed

-ac_fn_cxx_compute_int ()

-{

-  as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack

-  if test "$cross_compiling" = yes; then

-    # Depending upon the size, compute the lo and hi bounds.

-cat confdefs.h - <<_ACEOF >conftest.$ac_ext

-/* end confdefs.h.  */

-$4

-int

-main ()

-{

-static int test_array [1 - 2 * !(($2) >= 0)];

-test_array [0] = 0;

-return test_array [0];

-

-  ;

-  return 0;

-}

-_ACEOF

-if ac_fn_cxx_try_compile "$LINENO"; then :

-  ac_lo=0 ac_mid=0

-  while :; do

-    cat confdefs.h - <<_ACEOF >conftest.$ac_ext

-/* end confdefs.h.  */

-$4

-int

-main ()

-{

-static int test_array [1 - 2 * !(($2) <= $ac_mid)];

-test_array [0] = 0;

-return test_array [0];

-

-  ;

-  return 0;

-}

-_ACEOF

-if ac_fn_cxx_try_compile "$LINENO"; then :

-  ac_hi=$ac_mid; break

-else

-  as_fn_arith $ac_mid + 1 && ac_lo=$as_val

-			if test $ac_lo -le $ac_mid; then

-			  ac_lo= ac_hi=

-			  break

-			fi

-			as_fn_arith 2 '*' $ac_mid + 1 && ac_mid=$as_val

-fi

-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext

-  done

-else

-  cat confdefs.h - <<_ACEOF >conftest.$ac_ext

-/* end confdefs.h.  */

-$4

-int

-main ()

-{

-static int test_array [1 - 2 * !(($2) < 0)];

-test_array [0] = 0;

-return test_array [0];

-

-  ;

-  return 0;

-}

-_ACEOF

-if ac_fn_cxx_try_compile "$LINENO"; then :

-  ac_hi=-1 ac_mid=-1

-  while :; do

-    cat confdefs.h - <<_ACEOF >conftest.$ac_ext

-/* end confdefs.h.  */

-$4

-int

-main ()

-{

-static int test_array [1 - 2 * !(($2) >= $ac_mid)];

-test_array [0] = 0;

-return test_array [0];

-

-  ;

-  return 0;

-}

-_ACEOF

-if ac_fn_cxx_try_compile "$LINENO"; then :

-  ac_lo=$ac_mid; break

-else

-  as_fn_arith '(' $ac_mid ')' - 1 && ac_hi=$as_val

-			if test $ac_mid -le $ac_hi; then

-			  ac_lo= ac_hi=

-			  break

-			fi

-			as_fn_arith 2 '*' $ac_mid && ac_mid=$as_val

-fi

-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext

-  done

-else

-  ac_lo= ac_hi=

-fi

-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext

-fi

-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext

-# Binary search between lo and hi bounds.

-while test "x$ac_lo" != "x$ac_hi"; do

-  as_fn_arith '(' $ac_hi - $ac_lo ')' / 2 + $ac_lo && ac_mid=$as_val

-  cat confdefs.h - <<_ACEOF >conftest.$ac_ext

-/* end confdefs.h.  */

-$4

-int

-main ()

-{

-static int test_array [1 - 2 * !(($2) <= $ac_mid)];

-test_array [0] = 0;

-return test_array [0];

-

-  ;

-  return 0;

-}

-_ACEOF

-if ac_fn_cxx_try_compile "$LINENO"; then :

-  ac_hi=$ac_mid

-else

-  as_fn_arith '(' $ac_mid ')' + 1 && ac_lo=$as_val

-fi

-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext

-done

-case $ac_lo in #((

-?*) eval "$3=\$ac_lo"; ac_retval=0 ;;

-'') ac_retval=1 ;;

-esac

-  else

-    cat confdefs.h - <<_ACEOF >conftest.$ac_ext

-/* end confdefs.h.  */

-$4

-static long int longval () { return $2; }

-static unsigned long int ulongval () { return $2; }

-#include <stdio.h>

-#include <stdlib.h>

-int

-main ()

-{

-

-  FILE *f = fopen ("conftest.val", "w");

-  if (! f)

-    return 1;

-  if (($2) < 0)

-    {

-      long int i = longval ();

-      if (i != ($2))

-	return 1;

-      fprintf (f, "%ld", i);

-    }

-  else

-    {

-      unsigned long int i = ulongval ();

-      if (i != ($2))

-	return 1;

-      fprintf (f, "%lu", i);

-    }

-  /* Do not output a trailing newline, as this causes \r\n confusion

-     on some platforms.  */

-  return ferror (f) || fclose (f) != 0;

-

-  ;

-  return 0;

-}

-_ACEOF

-if ac_fn_cxx_try_run "$LINENO"; then :

-  echo >>conftest.val; read $3 <conftest.val; ac_retval=0

-else

-  ac_retval=1

-fi

-rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \

-  conftest.$ac_objext conftest.beam conftest.$ac_ext

-rm -f conftest.val

-

-  fi

-  eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno

-  as_fn_set_status $ac_retval

-

-} # ac_fn_cxx_compute_int

-

-# ac_fn_cxx_try_link LINENO

-# -------------------------

-# Try to link conftest.$ac_ext, and return whether this succeeded.

-ac_fn_cxx_try_link ()

-{

-  as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack

-  rm -f conftest.$ac_objext conftest$ac_exeext

-  if { { ac_try="$ac_link"

-case "(($ac_try" in

-  *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;

-  *) ac_try_echo=$ac_try;;

-esac

-eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""

-$as_echo "$ac_try_echo"; } >&5

-  (eval "$ac_link") 2>conftest.err

-  ac_status=$?

-  if test -s conftest.err; then

-    grep -v '^ *+' conftest.err >conftest.er1

-    cat conftest.er1 >&5

-    mv -f conftest.er1 conftest.err

-  fi

-  $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5

-  test $ac_status = 0; } && {

-	 test -z "$ac_cxx_werror_flag" ||

-	 test ! -s conftest.err

-       } && test -s conftest$ac_exeext && {

-	 test "$cross_compiling" = yes ||

-	 test -x conftest$ac_exeext

-       }; then :

-  ac_retval=0

-else

-  $as_echo "$as_me: failed program was:" >&5

-sed 's/^/| /' conftest.$ac_ext >&5

-

-	ac_retval=1

-fi

-  # Delete the IPA/IPO (Inter Procedural Analysis/Optimization) information

-  # created by the PGI compiler (conftest_ipa8_conftest.oo), as it would

-  # interfere with the next link command; also delete a directory that is

-  # left behind by Apple's compiler.  We do this before executing the actions.

-  rm -rf conftest.dSYM conftest_ipa8_conftest.oo

-  eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno

-  as_fn_set_status $ac_retval

-

-} # ac_fn_cxx_try_link

 cat >config.log <<_ACEOF

 This file contains any messages produced by compilers while

 running configure, to aid debugging if configure makes a mistake.

-It was created by CoGAPS $as_me 3.5.13, which was

+It was created by CoGAPS $as_me 3.9.1, which was

 generated by GNU Autoconf 2.69.  Invocation command line was

   $ $0 $@

@@ -3022,1119 +2749,19 @@ GAPS_CXX_FLAGS=

 GAPS_LIBS=

 # get compiler info

-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for C++ compiler vendor" >&5

-$as_echo_n "checking for C++ compiler vendor... " >&6; }

-if ${ax_cv_cxx_compiler_vendor+:} false; then :

-  $as_echo_n "(cached) " >&6

-else

-    # note: don't check for gcc first since some other compilers define __GNUC__

-  vendors="intel:     __ICC,__ECC,__INTEL_COMPILER

-           ibm:       __xlc__,__xlC__,__IBMC__,__IBMCPP__

-           pathscale: __PATHCC__,__PATHSCALE__

-           clang:     __clang__

-           cray:      _CRAYC

-           fujitsu:   __FUJITSU

-           gnu:       __GNUC__

-           sun:       __SUNPRO_C,__SUNPRO_CC

-           hp:        __HP_cc,__HP_aCC

-           dec:       __DECC,__DECCXX,__DECC_VER,__DECCXX_VER

-           borland:   __BORLANDC__,__CODEGEARC__,__TURBOC__

-           comeau:    __COMO__

-           kai:       __KCC

-           lcc:       __LCC__

-           sgi:       __sgi,sgi

-           microsoft: _MSC_VER

-           metrowerks: __MWERKS__

-           watcom:    __WATCOMC__

-           portland:  __PGI

-	   tcc:       __TINYC__

-           unknown:   UNKNOWN"

-  for ventest in $vendors; do

-    case $ventest in

-      *:) vendor=$ventest; continue ;;

-      *)  vencpp="defined("`echo $ventest | sed 's/,/) || defined(/g'`")" ;;

-    esac

-    cat confdefs.h - <<_ACEOF >conftest.$ac_ext

-/* end confdefs.h.  */

-

-int

-main ()

-{

-

-      #if !($vencpp)

-        thisisanerror;

-      #endif

-

-  ;

-  return 0;

-}

-_ACEOF

-if ac_fn_cxx_try_compile "$LINENO"; then :

-  break

-fi

-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext

-  done

-  ax_cv_cxx_compiler_vendor=`echo $vendor | cut -d: -f1`

-

-fi

-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_cv_cxx_compiler_vendor" >&5

-$as_echo "$ax_cv_cxx_compiler_vendor" >&6; }

-

-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for a sed that does not truncate output" >&5

-$as_echo_n "checking for a sed that does not truncate output... " >&6; }

-if ${ac_cv_path_SED+:} false; then :

-  $as_echo_n "(cached) " >&6

-else

-            ac_script=s/aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa/bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb/

-     for ac_i in 1 2 3 4 5 6 7; do

-       ac_script="$ac_script$as_nl$ac_script"

-     done

-     echo "$ac_script" 2>/dev/null | sed 99q >conftest.sed

-     { ac_script=; unset ac_script;}

-     if test -z "$SED"; then

-  ac_path_SED_found=false

-  # Loop through the user's path and test for each of PROGNAME-LIST

-  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR

-for as_dir in $PATH

-do

-  IFS=$as_save_IFS

-  test -z "$as_dir" && as_dir=.

-    for ac_prog in sed gsed; do

-    for ac_exec_ext in '' $ac_executable_extensions; do

-      ac_path_SED="$as_dir/$ac_prog$ac_exec_ext"

-      as_fn_executable_p "$ac_path_SED" || continue

-# Check for GNU ac_path_SED and select it if it is found.

-  # Check for GNU $ac_path_SED

-case `"$ac_path_SED" --version 2>&1` in

-*GNU*)

-  ac_cv_path_SED="$ac_path_SED" ac_path_SED_found=:;;

-*)

-  ac_count=0

-  $as_echo_n 0123456789 >"conftest.in"

-  while :

-  do

-    cat "conftest.in" "conftest.in" >"conftest.tmp"

-    mv "conftest.tmp" "conftest.in"

-    cp "conftest.in" "conftest.nl"

-    $as_echo '' >> "conftest.nl"

-    "$ac_path_SED" -f conftest.sed < "conftest.nl" >"conftest.out" 2>/dev/null || break

-    diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break

-    as_fn_arith $ac_count + 1 && ac_count=$as_val

-    if test $ac_count -gt ${ac_path_SED_max-0}; then

-      # Best one so far, save it but keep looking for a better one

-      ac_cv_path_SED="$ac_path_SED"

-      ac_path_SED_max=$ac_count

-    fi

-    # 10*(2^10) chars as input seems more than enough

-    test $ac_count -gt 10 && break

-  done

-  rm -f conftest.in conftest.tmp conftest.nl conftest.out;;

-esac

-

-      $ac_path_SED_found && break 3

-    done

-  done

-  done

-IFS=$as_save_IFS

-  if test -z "$ac_cv_path_SED"; then

-    as_fn_error $? "no acceptable sed could be found in \$PATH" "$LINENO" 5

-  fi

-else

-  ac_cv_path_SED=$SED

-fi

-

-fi

-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_path_SED" >&5

-$as_echo "$ac_cv_path_SED" >&6; }

- SED="$ac_cv_path_SED"

-  rm -f conftest.sed

-

-

-

-  { $as_echo "$as_me:${as_lineno-$LINENO}: checking for C++ compiler version" >&5

-$as_echo_n "checking for C++ compiler version... " >&6; }

-if ${ax_cv_cxx_compiler_version+:} false; then :

-  $as_echo_n "(cached) " >&6

-else

-         case $ax_cv_cxx_compiler_vendor in #(

-  intel) :

-       if ac_fn_cxx_compute_int "$LINENO" "__INTEL_COMPILER/100" "_ax_cxx_compiler_version_major"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_INTEL unknown intel compiler version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  if ac_fn_cxx_compute_int "$LINENO" "(__INTEL_COMPILER%100)/10" "_ax_cxx_compiler_version_minor"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_INTEL unknown intel compiler version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  if ac_fn_cxx_compute_int "$LINENO" "(__INTEL_COMPILER%10)" "_ax_cxx_compiler_version_patch"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_INTEL unknown intel compiler version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  ax_cv_cxx_compiler_version="$_ax_cxx_compiler_version_major.$_ax_cxx_compiler_version_minor.$_ax_cxx_compiler_version_patch"

-   ;; #(

-  ibm) :

-         cat confdefs.h - <<_ACEOF >conftest.$ac_ext

-/* end confdefs.h.  */

-

-

-int

-main ()

-{

-

-        #if defined(__COMPILER_VER__)

-        choke me;

-        #endif

-

-  ;

-  return 0;

-}

-_ACEOF

-if ac_fn_cxx_try_compile "$LINENO"; then :

-

-      if ac_fn_cxx_compute_int "$LINENO" "__xlC__/100" "_ax_cxx_compiler_version_major"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_IBM unknown IBM compiler major version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-      if ac_fn_cxx_compute_int "$LINENO" "__xlC__%100" "_ax_cxx_compiler_version_minor"        ""; then :

+AX_COMPILER_VENDOR

+AX_COMPILER_VERSION

+# set openmp flags, disable only if requested

+# Check whether --enable-openmp was given.

+if test "${enable_openmp+set}" = set; then :

+  enableval=$enable_openmp; use_openmp=$enableval

 else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_IBM unknown IBM compiler minor version

-See \`config.log' for more details" "$LINENO" 5; }

+  use_openmp=yes

 fi

-      if ac_fn_cxx_compute_int "$LINENO" "__xlC_ver__/0x100" "_ax_cxx_compiler_version_patch"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_IBM unknown IBM compiler patch version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-      if ac_fn_cxx_compute_int "$LINENO" "__xlC_ver__%0x100" "_ax_cxx_compiler_version_build"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_IBM unknown IBM compiler build version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-      ax_cv_cxx_compiler_version="$_ax_cxx_compiler_version_major.$_ax_cxx_compiler_version_minor.$_ax_cxx_compiler_version_patch.$_ax_cxx_compiler_version_build"

-

-else

-

-      if ac_fn_cxx_compute_int "$LINENO" "__xlC__%1000" "_ax_cxx_compiler_version_patch"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_IBM unknown IBM compiler patch version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-      if ac_fn_cxx_compute_int "$LINENO" "(__xlC__/10000)%10" "_ax_cxx_compiler_version_minor"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_IBM unknown IBM compiler minor version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-      if ac_fn_cxx_compute_int "$LINENO" "(__xlC__/100000)%10" "_ax_cxx_compiler_version_major"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_IBM unknown IBM compiler major version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-      ax_cv_cxx_compiler_version="$_ax_cxx_compiler_version_major.$_ax_cxx_compiler_version_minor.$_ax_cxx_compiler_version_patch"

-

-fi

-rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext

- ;; #(

-  pathscale) :

-

-  if ac_fn_cxx_compute_int "$LINENO" "__PATHCC__" "_ax_cxx_compiler_version_major"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_PATHSCALE unknown pathscale major

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  if ac_fn_cxx_compute_int "$LINENO" "__PATHCC_MINOR__" "_ax_cxx_compiler_version_minor"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_PATHSCALE unknown pathscale minor

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  if ac_fn_cxx_compute_int "$LINENO" "__PATHCC_PATCHLEVEL__" "_ax_cxx_compiler_version_patch"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_PATHSCALE unknown pathscale patch level

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  ax_cv_cxx_compiler_version="$_ax_cxx_compiler_version_major.$_ax_cxx_compiler_version_minor.$_ax_cxx_compiler_version_patch"

-   ;; #(

-  clang) :

-

-  if ac_fn_cxx_compute_int "$LINENO" "__clang_major__" "_ax_cxx_compiler_version_major"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_CLANG unknown clang major

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  if ac_fn_cxx_compute_int "$LINENO" "__clang_minor__" "_ax_cxx_compiler_version_minor"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_CLANG unknown clang minor

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  if ac_fn_cxx_compute_int "$LINENO" "__clang_patchlevel__" "_ax_cxx_compiler_version_patch"        ""; then :

-

-else

-  0

-fi

-

-  ax_cv_cxx_compiler_version="$_ax_cxx_compiler_version_major.$_ax_cxx_compiler_version_minor.$_ax_cxx_compiler_version_patch"

-   ;; #(

-  cray) :

-

-  if ac_fn_cxx_compute_int "$LINENO" "_RELEASE" "_ax_cxx_compiler_version_major"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_CRAY unknown crayc release

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  if ac_fn_cxx_compute_int "$LINENO" "_RELEASE_MINOR" "_ax_cxx_compiler_version_minor"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_CRAY unknown crayc minor

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  ax_cv_cxx_compiler_version="$_ax_cxx_compiler_version_major.$_ax_cxx_compiler_version_minor"

-   ;; #(

-  fujitsu) :

-

-  if ac_fn_cxx_compute_int "$LINENO" "__FCC_VERSION" "ax_cv_cxx_compiler_version"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_FUJITSUunknown fujitsu release

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-   ;; #(

-  gnu) :

-

-  if ac_fn_cxx_compute_int "$LINENO" "__GNUC__" "_ax_cxx_compiler_version_major"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_GNU unknown gcc major

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  if ac_fn_cxx_compute_int "$LINENO" "__GNUC_MINOR__" "_ax_cxx_compiler_version_minor"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_GNU unknown gcc minor

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  if ac_fn_cxx_compute_int "$LINENO" "__GNUC_PATCHLEVEL__" "_ax_cxx_compiler_version_patch"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_GNU unknown gcc patch level

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  ax_cv_cxx_compiler_version="$_ax_cxx_compiler_version_major.$_ax_cxx_compiler_version_minor.$_ax_cxx_compiler_version_patch"

-   ;; #(

-  sun) :

-

-

-  if ac_fn_cxx_compute_int "$LINENO" "!!(

-	     #if defined(__SUNPRO_CC)

-	     __SUNPRO_CC

-	     #else

-	     __SUNPRO_C

-	     #endif

-	     < 0x1000)" "_ax_cxx_compiler_version_until59"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_SUN unknown sun release version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  if test "X$_ax_cxx_compiler_version_until59" = X1; then :

-        if ac_fn_cxx_compute_int "$LINENO" "

-	     #if defined(__SUNPRO_CC)

-	     __SUNPRO_CC

-	     #else

-	     __SUNPRO_C

-	     #endif

-	     % 0x10" "_ax_cxx_compiler_version_patch"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_SUN unknown sun patch version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-      if ac_fn_cxx_compute_int "$LINENO" "(

-	     #if defined(__SUNPRO_CC)

-	     __SUNPRO_CC

-	     #else

-	     __SUNPRO_C

-	     #endif

-	     / 0x10) % 0x10" "_ax_cxx_compiler_version_minor"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_SUN unknown sun minor version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-      if ac_fn_cxx_compute_int "$LINENO" "(

-	     #if defined(__SUNPRO_CC)

-	     __SUNPRO_CC

-	     #else

-	     __SUNPRO_C

-	     #endif

-	     / 0x100)" "_ax_cxx_compiler_version_major"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_SUN unknown sun major version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-

-else

-        if ac_fn_cxx_compute_int "$LINENO" "

-	     #if defined(__SUNPRO_CC)

-	     __SUNPRO_CC

-	     #else

-	     __SUNPRO_C

-	     #endif

-	     % 0x10" "_ax_cxx_compiler_version_patch"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_SUN unknown sun patch version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-      if ac_fn_cxx_compute_int "$LINENO" "(

-	     #if defined(__SUNPRO_CC)

-	     __SUNPRO_CC

-	     #else

-	     __SUNPRO_C

-	     #endif

-	     / 0x100) % 0x100" "_ax_cxx_compiler_version_minor"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_SUN unknown sun minor version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-      if ac_fn_cxx_compute_int "$LINENO" "(

-	     #if defined(__SUNPRO_CC)

-	     __SUNPRO_CC

-	     #else

-	     __SUNPRO_C

-	     #endif

-	     / 0x1000)" "_ax_cxx_compiler_version_major"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_SUN unknown sun major version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-

-fi

-  ax_cv_cxx_compiler_version="$_ax_cxx_compiler_version_major.$_ax_cxx_compiler_version_minor.$_ax_cxx_compiler_version_patch"

- ;; #(

-  hp) :

-

-

-  if ac_fn_cxx_compute_int "$LINENO" "!!(

-	     #if defined(__HP_cc)

-	     __HP_cc

-	     #else

-	     __HP_aCC

-	     #endif

-	     <= 1)" "_ax_cxx_compiler_version_untilA0121"        ""; then :

-

-else

-  { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5

-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}

-as_fn_error $? "_AX_COMPILER_VERSION_HP unknown hp release version

-See \`config.log' for more details" "$LINENO" 5; }

-fi

-

-  if test "X$_ax_cxx_compiler_version_untilA0121" = X1; then :

-             ax_cv_cxx_compiler_version="01.21.00"

-

-else