@@ -5,12 +5,12 @@ export(CoGapsFromCheckpoint)

 export(GWCoGAPS)

 export(GWCoGapsFromCheckpoint)

 export(binaryA)

+export(buildReport)

 export(calcCoGAPSStat)

 export(calcGeneGSStat)

 export(calcZ)

 export(computeGeneGSProb)

 export(createGWCoGAPSSets)

-export(displayBuildReport)

 export(gapsMapRun)

 export(gapsRun)

 export(plotAtoms)

@@ -124,9 +124,9 @@ CoGapsFromCheckpoint <- function(D, S, path, checkpointFile=NA)

 #' @examples

 #'  CoGAPS::displayBuildReport()

 #' @export

-displayBuildReport <- function()

+buildReport <- function()

 {

-    displayBuildReport_cpp()

+    getBuildReport_cpp()

 }

 #' Backwards Compatibility with v2

@@ -9,8 +9,8 @@ cogapsFromCheckpoint_cpp <- function(D, S, nFactor, nEquil, nSample, fileName, c

     .Call('_CoGAPS_cogapsFromCheckpoint_cpp', PACKAGE = 'CoGAPS', D, S, nFactor, nEquil, nSample, fileName, cptFile)

 }

-displayBuildReport_cpp <- function() {

-    invisible(.Call('_CoGAPS_displayBuildReport_cpp', PACKAGE = 'CoGAPS'))

+getBuildReport_cpp <- function() {

+    .Call('_CoGAPS_getBuildReport_cpp', PACKAGE = 'CoGAPS')

 }

 run_catch_unit_tests <- function() {

similarity index 85%

rename from man/displayBuildReport.Rd

rename to man/buildReport.Rd

@@ -1,10 +1,10 @@

 % Generated by roxygen2: do not edit by hand

 % Please edit documentation in R/CoGAPS.R

-\name{displayBuildReport}

-\alias{displayBuildReport}

+\name{buildReport}

+\alias{buildReport}

 \title{Display Information About Package Compilation}

 \usage{

-displayBuildReport()

+buildReport()

 }

 \value{

 display builds information

@@ -46,24 +46,25 @@ unsigned nSample, const std::string &fileName, const std::string &cptFile)

 }

 // [[Rcpp::export]]

-void displayBuildReport_cpp()

+std::string getBuildReport_cpp()

 {

 #if defined( __clang__ )

-    Rcpp::Rcout << "Compiled with Clang\n";

+    std::string compiler = "Compiled with Clang\n";

 #elif defined( __INTEL_COMPILER )

-    Rcpp::Rcout << "Compiled with Intel ICC/ICPC\n";

+    std::string compiler = "Compiled with Intel ICC/ICPC\n";

 #elif defined( __GNUC__ )

-    Rcpp::Rcout << "Compiled with GCC v" << STR( __GNUC__ ) << "."

-        << STR( __GNUC_MINOR__ ) << '\n';

+    std::string compiler = "Compiled with GCC v" + std::string(STR( __GNUC__ ))

+    + "." + std::string(STR( __GNUC_MINOR__ )) + '\n';

 #elif defined( _MSC_VER )

-    Rcpp::Rcout << "Compiled with Microsoft Visual Studio\n";

+    std::string compiler = "Compiled with Microsoft Visual Studio\n";

 #endif

 #if defined( __GAPS_AVX__ )

-    Rcpp::Rcout << "AVX enabled\n";

+    std::string simd = "AVX enabled\n";

 #elif defined( __GAPS_SSE__ )

-    Rcpp::Rcout << "SSE enabled\n";

+    std::string simd = "SSE enabled\n";

 #else

-    Rcpp::Rcout << "SIMD not enabled\n";

+    std::string simd = "SIMD not enabled\n";

 #endif

+    return compiler + simd;

 }

@@ -53,13 +53,14 @@ BEGIN_RCPP

     return rcpp_result_gen;

 END_RCPP

 }

-// displayBuildReport_cpp

-void displayBuildReport_cpp();

-RcppExport SEXP _CoGAPS_displayBuildReport_cpp() {

+// getBuildReport_cpp

+std::string getBuildReport_cpp();

+RcppExport SEXP _CoGAPS_getBuildReport_cpp() {

 BEGIN_RCPP

+    Rcpp::RObject rcpp_result_gen;

     Rcpp::RNGScope rcpp_rngScope_gen;

-    displayBuildReport_cpp();

-    return R_NilValue;

+    rcpp_result_gen = Rcpp::wrap(getBuildReport_cpp());

+    return rcpp_result_gen;

 END_RCPP

 }

 // run_catch_unit_tests

@@ -76,7 +77,7 @@ END_RCPP

 static const R_CallMethodDef CallEntries[] = {

     {"_CoGAPS_cogaps_cpp", (DL_FUNC) &_CoGAPS_cogaps_cpp, 21},

     {"_CoGAPS_cogapsFromCheckpoint_cpp", (DL_FUNC) &_CoGAPS_cogapsFromCheckpoint_cpp, 7},

-    {"_CoGAPS_displayBuildReport_cpp", (DL_FUNC) &_CoGAPS_displayBuildReport_cpp, 0},

+    {"_CoGAPS_getBuildReport_cpp", (DL_FUNC) &_CoGAPS_getBuildReport_cpp, 0},

     {"_CoGAPS_run_catch_unit_tests", (DL_FUNC) &_CoGAPS_run_catch_unit_tests, 0},

     {NULL, NULL, 0}

 };