@@ -9,6 +9,8 @@

 ^inst/profiling/

 ^inst/vignettes/

+^.git

+

 ^src/AtomicDomain.o

 ^src/Cogaps.o

 ^src/GapsRunner.o

@@ -19,6 +21,7 @@

 ^src/test-runner.o

 ^src/data_structures/Matrix.o

 ^src/data_structures/Vector.o

+^src/file_parser/FileParser.o

 ^src/file_parser/CsvParser.o

 ^src/file_parser/TsvParser.o

 ^src/file_parser/MtxParser.o

@@ -6,6 +6,8 @@

 *.so

 *.o

+.git

+

 # ignore OS X files

 *.DS_Store

 .Rproj.user

@@ -25,3 +27,4 @@ config.status

 aclocal.m4

 autom4te.cache/

 src/Makevars

+

deleted file mode 100644

@@ -1,339 +0,0 @@

-                    GNU GENERAL PUBLIC LICENSE

-                       Version 2, June 1991

-

- Copyright (C) 1989, 1991 Free Software Foundation, Inc.,

- 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA

- Everyone is permitted to copy and distribute verbatim copies

- of this license document, but changing it is not allowed.

-

-                            Preamble

-

-  The licenses for most software are designed to take away your

-freedom to share and change it.  By contrast, the GNU General Public

-License is intended to guarantee your freedom to share and change free

-software--to make sure the software is free for all its users.  This

-General Public License applies to most of the Free Software

-Foundation's software and to any other program whose authors commit to

-using it.  (Some other Free Software Foundation software is covered by

-the GNU Lesser General Public License instead.)  You can apply it to

-your programs, too.

-

-  When we speak of free software, we are referring to freedom, not

-price.  Our General Public Licenses are designed to make sure that you

-have the freedom to distribute copies of free software (and charge for

-this service if you wish), that you receive source code or can get it

-if you want it, that you can change the software or use pieces of it

-in new free programs; and that you know you can do these things.

-

-  To protect your rights, we need to make restrictions that forbid

-anyone to deny you these rights or to ask you to surrender the rights.

-These restrictions translate to certain responsibilities for you if you

-distribute copies of the software, or if you modify it.

-

-  For example, if you distribute copies of such a program, whether

-gratis or for a fee, you must give the recipients all the rights that

-you have.  You must make sure that they, too, receive or can get the

-source code.  And you must show them these terms so they know their

-rights.

-

-  We protect your rights with two steps: (1) copyright the software, and

-(2) offer you this license which gives you legal permission to copy,

-distribute and/or modify the software.

-

-  Also, for each author's protection and ours, we want to make certain

-that everyone understands that there is no warranty for this free

-software.  If the software is modified by someone else and passed on, we

-want its recipients to know that what they have is not the original, so

-that any problems introduced by others will not reflect on the original

-authors' reputations.

-

-  Finally, any free program is threatened constantly by software

-patents.  We wish to avoid the danger that redistributors of a free

-program will individually obtain patent licenses, in effect making the

-program proprietary.  To prevent this, we have made it clear that any

-patent must be licensed for everyone's free use or not licensed at all.

-

-  The precise terms and conditions for copying, distribution and

-modification follow.

-

-                    GNU GENERAL PUBLIC LICENSE

-   TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION

-

-  0. This License applies to any program or other work which contains

-a notice placed by the copyright holder saying it may be distributed

-under the terms of this General Public License.  The "Program", below,

-refers to any such program or work, and a "work based on the Program"

-means either the Program or any derivative work under copyright law:

-that is to say, a work containing the Program or a portion of it,

-either verbatim or with modifications and/or translated into another

-language.  (Hereinafter, translation is included without limitation in

-the term "modification".)  Each licensee is addressed as "you".

-

-Activities other than copying, distribution and modification are not

-covered by this License; they are outside its scope.  The act of

-running the Program is not restricted, and the output from the Program

-is covered only if its contents constitute a work based on the

-Program (independent of having been made by running the Program).

-Whether that is true depends on what the Program does.

-

-  1. You may copy and distribute verbatim copies of the Program's

-source code as you receive it, in any medium, provided that you

-conspicuously and appropriately publish on each copy an appropriate

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-notices that refer to this License and to the absence of any warranty;

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-along with the Program.

-

-You may charge a fee for the physical act of transferring a copy, and

-you may at your option offer warranty protection in exchange for a fee.

-

-  2. You may modify your copy or copies of the Program or any portion

-of it, thus forming a work based on the Program, and copy and

-distribute such modifications or work under the terms of Section 1

-above, provided that you also meet all of these conditions:

-

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-    b) You must cause any work that you distribute or publish, that in

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-    part thereof, to be licensed as a whole at no charge to all third

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-

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-

-These requirements apply to the modified work as a whole.  If

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-this License, whose permissions for other licensees extend to the

-entire whole, and thus to each and every part regardless of who wrote it.

-

-Thus, it is not the intent of this section to claim rights or contest

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-exercise the right to control the distribution of derivative or

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-

-In addition, mere aggregation of another work not based on the Program

-with the Program (or with a work based on the Program) on a volume of

-a storage or distribution medium does not bring the other work under

-the scope of this License.

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-  3. You may copy and distribute the Program (or a work based on it,

-under Section 2) in object code or executable form under the terms of

-Sections 1 and 2 above provided that you also do one of the following:

-

-    a) Accompany it with the complete corresponding machine-readable

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-

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-

-  5. You are not required to accept this License, since you have not

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-prohibited by law if you do not accept this License.  Therefore, by

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-the Program or works based on it.

-

-  6. Each time you redistribute the Program (or any work based on the

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-You are not responsible for enforcing compliance by third parties to

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-

-  7. If, as a consequence of a court judgment or allegation of patent

-infringement or for any other reason (not limited to patent issues),

-conditions are imposed on you (whether by court order, agreement or

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-may not distribute the Program at all.  For example, if a patent

-license would not permit royalty-free redistribution of the Program by

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-the only way you could satisfy both it and this License would be to

-refrain entirely from distribution of the Program.

-

-If any portion of this section is held invalid or unenforceable under

-any particular circumstance, the balance of the section is intended to

-apply and the section as a whole is intended to apply in other

-circumstances.

-

-It is not the purpose of this section to induce you to infringe any

-patents or other property right claims or to contest validity of any

-such claims; this section has the sole purpose of protecting the

-integrity of the free software distribution system, which is

-implemented by public license practices.  Many people have made

-generous contributions to the wide range of software distributed

-through that system in reliance on consistent application of that

-system; it is up to the author/donor to decide if he or she is willing

-to distribute software through any other system and a licensee cannot

-impose that choice.

-

-This section is intended to make thoroughly clear what is believed to

-be a consequence of the rest of this License.

-

-  8. If the distribution and/or use of the Program is restricted in

-certain countries either by patents or by copyrighted interfaces, the

-original copyright holder who places the Program under this License

-may add an explicit geographical distribution limitation excluding

-those countries, so that distribution is permitted only in or among

-countries not thus excluded.  In such case, this License incorporates

-the limitation as if written in the body of this License.

-

-  9. The Free Software Foundation may publish revised and/or new versions

-of the General Public License from time to time.  Such new versions will

-be similar in spirit to the present version, but may differ in detail to

-address new problems or concerns.

-

-Each version is given a distinguishing version number.  If the Program

-specifies a version number of this License which applies to it and "any

-later version", you have the option of following the terms and conditions

-either of that version or of any later version published by the Free

-Software Foundation.  If the Program does not specify a version number of

-this License, you may choose any version ever published by the Free Software

-Foundation.

-

-  10. If you wish to incorporate parts of the Program into other free

-programs whose distribution conditions are different, write to the author

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-of promoting the sharing and reuse of software generally.

-

-                            NO WARRANTY

-

-  11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY

-FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.  EXCEPT WHEN

-OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES

-PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED

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-TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU.  SHOULD THE

-PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,

-REPAIR OR CORRECTION.

-

-  12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING

-WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR

-REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,

-INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING

-OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED

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-YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER

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-POSSIBILITY OF SUCH DAMAGES.

-

-                     END OF TERMS AND CONDITIONS

-

-            How to Apply These Terms to Your New Programs

-

-  If you develop a new program, and you want it to be of the greatest

-possible use to the public, the best way to achieve this is to make it

-free software which everyone can redistribute and change under these terms.

-

-  To do so, attach the following notices to the program.  It is safest

-to attach them to the start of each source file to most effectively

-convey the exclusion of warranty; and each file should have at least

-the "copyright" line and a pointer to where the full notice is found.

-

-    <one line to give the program's name and a brief idea of what it does.>

-    Copyright (C) <year>  <name of author>

-

-    This program is free software; you can redistribute it and/or modify

-    it under the terms of the GNU General Public License as published by

-    the Free Software Foundation; either version 2 of the License, or

-    (at your option) any later version.

-

-    This program is distributed in the hope that it will be useful,

-    but WITHOUT ANY WARRANTY; without even the implied warranty of

-    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

-    GNU General Public License for more details.

-

-    You should have received a copy of the GNU General Public License along

-    with this program; if not, write to the Free Software Foundation, Inc.,

-    51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.

-

-Also add information on how to contact you by electronic and paper mail.

-

-If the program is interactive, make it output a short notice like this

-when it starts in an interactive mode:

-

-    Gnomovision version 69, Copyright (C) year name of author

-    Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.

-    This is free software, and you are welcome to redistribute it

-    under certain conditions; type `show c' for details.

-

-The hypothetical commands `show w' and `show c' should show the appropriate

-parts of the General Public License.  Of course, the commands you use may

-be called something other than `show w' and `show c'; they could even be

-mouse-clicks or menu items--whatever suits your program.

-

-You should also get your employer (if you work as a programmer) or your

-school, if any, to sign a "copyright disclaimer" for the program, if

-necessary.  Here is a sample; alter the names:

-

-  Yoyodyne, Inc., hereby disclaims all copyright interest in the program

-  `Gnomovision' (which makes passes at compilers) written by James Hacker.

-

-  <signature of Ty Coon>, 1 April 1989

-  Ty Coon, President of Vice

-

-This General Public License does not permit incorporating your program into

-proprietary programs.  If your program is a subroutine library, you may

-consider it more useful to permit linking proprietary applications with the

-library.  If this is what you want to do, use the GNU Lesser General

-Public License instead of this License.

new file mode 100644

@@ -0,0 +1,2 @@

+#! /bin/sh

+/bin/rm src/Makevars

\ No newline at end of file

new file mode 120000

@@ -0,0 +1 @@

+/usr/share/automake-1.15/compile

\ No newline at end of file

new file mode 120000

@@ -0,0 +1 @@

+/usr/share/automake-1.15/config.guess

\ No newline at end of file

new file mode 120000

@@ -0,0 +1 @@

+/usr/share/automake-1.15/config.sub

\ No newline at end of file

@@ -582,13 +582,18 @@ PACKAGE_STRING='CoGAPS 3.1.3'

 PACKAGE_BUGREPORT=''

 PACKAGE_URL=''

-ac_subst_vars='LTLIBOBJS

+ac_subst_vars='am__EXEEXT_FALSE

+am__EXEEXT_TRUE

+LTLIBOBJS

 LIBOBJS

 GAPS_LIBS

 GAPS_CXX_FLAGS

 GAPS_CPP_FLAGS

 CPUEXT_FLAGS

 SIMD_FLAGS

+am__fastdepCC_FALSE

+am__fastdepCC_TRUE

+CCDEPMODE

 ac_ct_CC

 CFLAGS

 CC

@@ -602,6 +607,16 @@ build_cpu

 build

 SED

 CXXCPP

+am__fastdepCXX_FALSE

+am__fastdepCXX_TRUE

+CXXDEPMODE

+am__nodep

+AMDEPBACKSLASH

+AMDEP_FALSE

+AMDEP_TRUE

+am__quote

+am__include

+DEPDIR

 OBJEXT

 EXEEXT

 ac_ct_CXX

@@ -609,6 +624,33 @@ CPPFLAGS

 LDFLAGS

 CXXFLAGS

 CXX

+AM_BACKSLASH

+AM_DEFAULT_VERBOSITY

+AM_DEFAULT_V

+AM_V

+am__untar

+am__tar

+AMTAR

+am__leading_dot

+SET_MAKE

+AWK

+mkdir_p

+MKDIR_P

+INSTALL_STRIP_PROGRAM

+STRIP

+install_sh

+MAKEINFO

+AUTOHEADER

+AUTOMAKE

+AUTOCONF

+ACLOCAL

+VERSION

+PACKAGE

+CYGPATH_W

+am__isrc

+INSTALL_DATA

+INSTALL_SCRIPT

+INSTALL_PROGRAM

 target_alias

 host_alias

 build_alias

@@ -651,6 +693,8 @@ SHELL'

 ac_subst_files=''

 ac_user_opts='

 enable_option_checking

+enable_silent_rules

+enable_dependency_tracking

 enable_debug

 enable_warnings

 enable_simd

@@ -1275,6 +1319,11 @@ _ACEOF

   cat <<\_ACEOF

+Program names:

+  --program-prefix=PREFIX            prepend PREFIX to installed program names

+  --program-suffix=SUFFIX            append SUFFIX to installed program names

+  --program-transform-name=PROGRAM   run sed PROGRAM on installed program names

+

 System types:

   --build=BUILD     configure for building on BUILD [guessed]

   --host=HOST       cross-compile to build programs to run on HOST [BUILD]

@@ -1291,6 +1340,12 @@ Optional Features:

   --disable-option-checking  ignore unrecognized --enable/--with options

   --disable-FEATURE       do not include FEATURE (same as --enable-FEATURE=no)

   --enable-FEATURE[=ARG]  include FEATURE [ARG=yes]

+  --enable-silent-rules   less verbose build output (undo: "make V=1")

+  --disable-silent-rules  verbose build output (undo: "make V=0")

+  --enable-dependency-tracking

+                          do not reject slow dependency extractors

+  --disable-dependency-tracking

+                          speeds up one-time build

   --enable-debug          build debug version of CoGAPS

   --enable-warnings       compile CoGAPS with warning messages

   --enable-simd           specify simd instruction set (sse, avx)

@@ -2164,6 +2219,614 @@ ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $

 ac_compiler_gnu=$ac_cv_c_compiler_gnu

+am__api_version='1.15'

+

+ac_aux_dir=

+for ac_dir in "$srcdir" "$srcdir/.." "$srcdir/../.."; do

+  if test -f "$ac_dir/install-sh"; then

+    ac_aux_dir=$ac_dir

+    ac_install_sh="$ac_aux_dir/install-sh -c"

+    break

+  elif test -f "$ac_dir/install.sh"; then

+    ac_aux_dir=$ac_dir

+    ac_install_sh="$ac_aux_dir/install.sh -c"

+    break

+  elif test -f "$ac_dir/shtool"; then

+    ac_aux_dir=$ac_dir

+    ac_install_sh="$ac_aux_dir/shtool install -c"

+    break

+  fi

+done

+if test -z "$ac_aux_dir"; then

+  as_fn_error $? "cannot find install-sh, install.sh, or shtool in \"$srcdir\" \"$srcdir/..\" \"$srcdir/../..\"" "$LINENO" 5

+fi

+

+# These three variables are undocumented and unsupported,

+# and are intended to be withdrawn in a future Autoconf release.

+# They can cause serious problems if a builder's source tree is in a directory

+# whose full name contains unusual characters.

+ac_config_guess="$SHELL $ac_aux_dir/config.guess"  # Please don't use this var.

+ac_config_sub="$SHELL $ac_aux_dir/config.sub"  # Please don't use this var.

+ac_configure="$SHELL $ac_aux_dir/configure"  # Please don't use this var.

+

+

+# Find a good install program.  We prefer a C program (faster),

+# so one script is as good as another.  But avoid the broken or

+# incompatible versions:

+# SysV /etc/install, /usr/sbin/install

+# SunOS /usr/etc/install

+# IRIX /sbin/install

+# AIX /bin/install

+# AmigaOS /C/install, which installs bootblocks on floppy discs

+# AIX 4 /usr/bin/installbsd, which doesn't work without a -g flag

+# AFS /usr/afsws/bin/install, which mishandles nonexistent args

+# SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff"

+# OS/2's system install, which has a completely different semantic

+# ./install, which can be erroneously created by make from ./install.sh.

+# Reject install programs that cannot install multiple files.

+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for a BSD-compatible install" >&5

+$as_echo_n "checking for a BSD-compatible install... " >&6; }

+if test -z "$INSTALL"; then

+if ${ac_cv_path_install+:} false; then :

+  $as_echo_n "(cached) " >&6

+else

+  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR

+for as_dir in $PATH

+do

+  IFS=$as_save_IFS

+  test -z "$as_dir" && as_dir=.

+    # Account for people who put trailing slashes in PATH elements.

+case $as_dir/ in #((

+  ./ | .// | /[cC]/* | \

+  /etc/* | /usr/sbin/* | /usr/etc/* | /sbin/* | /usr/afsws/bin/* | \

+  ?:[\\/]os2[\\/]install[\\/]* | ?:[\\/]OS2[\\/]INSTALL[\\/]* | \

+  /usr/ucb/* ) ;;

+  *)

+    # OSF1 and SCO ODT 3.0 have their own names for install.

+    # Don't use installbsd from OSF since it installs stuff as root

+    # by default.

+    for ac_prog in ginstall scoinst install; do

+      for ac_exec_ext in '' $ac_executable_extensions; do

+	if as_fn_executable_p "$as_dir/$ac_prog$ac_exec_ext"; then

+	  if test $ac_prog = install &&

+	    grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then

+	    # AIX install.  It has an incompatible calling convention.

+	    :

+	  elif test $ac_prog = install &&

+	    grep pwplus "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then

+	    # program-specific install script used by HP pwplus--don't use.

+	    :

+	  else

+	    rm -rf conftest.one conftest.two conftest.dir

+	    echo one > conftest.one

+	    echo two > conftest.two

+	    mkdir conftest.dir

+	    if "$as_dir/$ac_prog$ac_exec_ext" -c conftest.one conftest.two "`pwd`/conftest.dir" &&

+	      test -s conftest.one && test -s conftest.two &&

+	      test -s conftest.dir/conftest.one &&

+	      test -s conftest.dir/conftest.two

+	    then

+	      ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c"

+	      break 3

+	    fi

+	  fi

+	fi

+      done

+    done

+    ;;

+esac

+

+  done

+IFS=$as_save_IFS

+

+rm -rf conftest.one conftest.two conftest.dir

+

+fi

+  if test "${ac_cv_path_install+set}" = set; then

+    INSTALL=$ac_cv_path_install

+  else

+    # As a last resort, use the slow shell script.  Don't cache a

+    # value for INSTALL within a source directory, because that will

+    # break other packages using the cache if that directory is

+    # removed, or if the value is a relative name.

+    INSTALL=$ac_install_sh

+  fi

+fi

+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $INSTALL" >&5

+$as_echo "$INSTALL" >&6; }

+

+# Use test -z because SunOS4 sh mishandles braces in ${var-val}.

+# It thinks the first close brace ends the variable substitution.

+test -z "$INSTALL_PROGRAM" && INSTALL_PROGRAM='${INSTALL}'

+

+test -z "$INSTALL_SCRIPT" && INSTALL_SCRIPT='${INSTALL}'

+

+test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644'

+

+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether build environment is sane" >&5

+$as_echo_n "checking whether build environment is sane... " >&6; }

+# Reject unsafe characters in $srcdir or the absolute working directory

+# name.  Accept space and tab only in the latter.

+am_lf='

+'

+case `pwd` in

+  *[\\\"\#\$\&\'\`$am_lf]*)

+    as_fn_error $? "unsafe absolute working directory name" "$LINENO" 5;;

+esac

+case $srcdir in

+  *[\\\"\#\$\&\'\`$am_lf\ \	]*)

+    as_fn_error $? "unsafe srcdir value: '$srcdir'" "$LINENO" 5;;

+esac

+

+# Do 'set' in a subshell so we don't clobber the current shell's

+# arguments.  Must try -L first in case configure is actually a

+# symlink; some systems play weird games with the mod time of symlinks

+# (eg FreeBSD returns the mod time of the symlink's containing

+# directory).

+if (

+   am_has_slept=no

+   for am_try in 1 2; do

+     echo "timestamp, slept: $am_has_slept" > conftest.file

+     set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null`

+     if test "$*" = "X"; then

+	# -L didn't work.

+	set X `ls -t "$srcdir/configure" conftest.file`

+     fi

+     if test "$*" != "X $srcdir/configure conftest.file" \

+	&& test "$*" != "X conftest.file $srcdir/configure"; then

+

+	# If neither matched, then we have a broken ls.  This can happen

+	# if, for instance, CONFIG_SHELL is bash and it inherits a

+	# broken ls alias from the environment.  This has actually

+	# happened.  Such a system could not be considered "sane".

+	as_fn_error $? "ls -t appears to fail.  Make sure there is not a broken

+  alias in your environment" "$LINENO" 5

+     fi

+     if test "$2" = conftest.file || test $am_try -eq 2; then

+       break

+     fi

+     # Just in case.

+     sleep 1

+     am_has_slept=yes

+   done

+   test "$2" = conftest.file

+   )

+then

+   # Ok.

+   :

+else

+   as_fn_error $? "newly created file is older than distributed files!

+Check your system clock" "$LINENO" 5

+fi

+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5

+$as_echo "yes" >&6; }

+# If we didn't sleep, we still need to ensure time stamps of config.status and

+# generated files are strictly newer.

+am_sleep_pid=

+if grep 'slept: no' conftest.file >/dev/null 2>&1; then

+  ( sleep 1 ) &

+  am_sleep_pid=$!

+fi

+

+rm -f conftest.file

+

+test "$program_prefix" != NONE &&

+  program_transform_name="s&^&$program_prefix&;$program_transform_name"

+# Use a double $ so make ignores it.

+test "$program_suffix" != NONE &&

+  program_transform_name="s&\$&$program_suffix&;$program_transform_name"

+# Double any \ or $.

+# By default was `s,x,x', remove it if useless.

+ac_script='s/[\\$]/&&/g;s/;s,x,x,$//'

+program_transform_name=`$as_echo "$program_transform_name" | sed "$ac_script"`

+

+# Expand $ac_aux_dir to an absolute path.

+am_aux_dir=`cd "$ac_aux_dir" && pwd`

+

+if test x"${MISSING+set}" != xset; then

+  case $am_aux_dir in

+  *\ * | *\	*)

+    MISSING="\${SHELL} \"$am_aux_dir/missing\"" ;;

+  *)

+    MISSING="\${SHELL} $am_aux_dir/missing" ;;

+  esac

+fi

+# Use eval to expand $SHELL

+if eval "$MISSING --is-lightweight"; then

+  am_missing_run="$MISSING "

+else

+  am_missing_run=

+  { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: 'missing' script is too old or missing" >&5

+$as_echo "$as_me: WARNING: 'missing' script is too old or missing" >&2;}

+fi

+

+if test x"${install_sh+set}" != xset; then

+  case $am_aux_dir in

+  *\ * | *\	*)

+    install_sh="\${SHELL} '$am_aux_dir/install-sh'" ;;

+  *)

+    install_sh="\${SHELL} $am_aux_dir/install-sh"

+  esac

+fi

+

+# Installed binaries are usually stripped using 'strip' when the user

+# run "make install-strip".  However 'strip' might not be the right

+# tool to use in cross-compilation environments, therefore Automake

+# will honor the 'STRIP' environment variable to overrule this program.

+if test "$cross_compiling" != no; then

+  if test -n "$ac_tool_prefix"; then

+  # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args.

+set dummy ${ac_tool_prefix}strip; ac_word=$2

+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5

+$as_echo_n "checking for $ac_word... " >&6; }

+if ${ac_cv_prog_STRIP+:} false; then :

+  $as_echo_n "(cached) " >&6

+else

+  if test -n "$STRIP"; then

+  ac_cv_prog_STRIP="$STRIP" # Let the user override the test.

+else

+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR

+for as_dir in $PATH

+do

+  IFS=$as_save_IFS

+  test -z "$as_dir" && as_dir=.

+    for ac_exec_ext in '' $ac_executable_extensions; do

+  if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then

+    ac_cv_prog_STRIP="${ac_tool_prefix}strip"

+    $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5

+    break 2

+  fi

+done

+  done

+IFS=$as_save_IFS

+

+fi

+fi

+STRIP=$ac_cv_prog_STRIP

+if test -n "$STRIP"; then

+  { $as_echo "$as_me:${as_lineno-$LINENO}: result: $STRIP" >&5

+$as_echo "$STRIP" >&6; }

+else

+  { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5

+$as_echo "no" >&6; }

+fi

+

+

+fi

+if test -z "$ac_cv_prog_STRIP"; then

+  ac_ct_STRIP=$STRIP

+  # Extract the first word of "strip", so it can be a program name with args.

+set dummy strip; ac_word=$2

+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5

+$as_echo_n "checking for $ac_word... " >&6; }

+if ${ac_cv_prog_ac_ct_STRIP+:} false; then :

+  $as_echo_n "(cached) " >&6

+else

+  if test -n "$ac_ct_STRIP"; then

+  ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test.

+else

+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR

+for as_dir in $PATH

+do

+  IFS=$as_save_IFS

+  test -z "$as_dir" && as_dir=.

+    for ac_exec_ext in '' $ac_executable_extensions; do

+  if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then

+    ac_cv_prog_ac_ct_STRIP="strip"

+    $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5

+    break 2

+  fi

+done

+  done

+IFS=$as_save_IFS

+

+fi

+fi

+ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP

+if test -n "$ac_ct_STRIP"; then

+  { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_STRIP" >&5

+$as_echo "$ac_ct_STRIP" >&6; }

+else

+  { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5

+$as_echo "no" >&6; }

+fi

+

+  if test "x$ac_ct_STRIP" = x; then

+    STRIP=":"

+  else

+    case $cross_compiling:$ac_tool_warned in

+yes:)

+{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5

+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}

+ac_tool_warned=yes ;;

+esac

+    STRIP=$ac_ct_STRIP

+  fi

+else

+  STRIP="$ac_cv_prog_STRIP"

+fi

+

+fi

+INSTALL_STRIP_PROGRAM="\$(install_sh) -c -s"

+

+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for a thread-safe mkdir -p" >&5

+$as_echo_n "checking for a thread-safe mkdir -p... " >&6; }

+if test -z "$MKDIR_P"; then

+  if ${ac_cv_path_mkdir+:} false; then :

+  $as_echo_n "(cached) " >&6

+else

+  as_save_IFS=$IFS; IFS=$PATH_SEPARATOR

+for as_dir in $PATH$PATH_SEPARATOR/opt/sfw/bin

+do

+  IFS=$as_save_IFS

+  test -z "$as_dir" && as_dir=.

+    for ac_prog in mkdir gmkdir; do

+	 for ac_exec_ext in '' $ac_executable_extensions; do

+	   as_fn_executable_p "$as_dir/$ac_prog$ac_exec_ext" || continue

+	   case `"$as_dir/$ac_prog$ac_exec_ext" --version 2>&1` in #(

+	     'mkdir (GNU coreutils) '* | \

+	     'mkdir (coreutils) '* | \

+	     'mkdir (fileutils) '4.1*)

+	       ac_cv_path_mkdir=$as_dir/$ac_prog$ac_exec_ext

+	       break 3;;

+	   esac

+	 done

+       done

+  done

+IFS=$as_save_IFS

+

+fi

+

+  test -d ./--version && rmdir ./--version

+  if test "${ac_cv_path_mkdir+set}" = set; then

+    MKDIR_P="$ac_cv_path_mkdir -p"

+  else

+    # As a last resort, use the slow shell script.  Don't cache a

+    # value for MKDIR_P within a source directory, because that will

+    # break other packages using the cache if that directory is

+    # removed, or if the value is a relative name.

+    MKDIR_P="$ac_install_sh -d"

+  fi

+fi

+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $MKDIR_P" >&5

+$as_echo "$MKDIR_P" >&6; }

+

+for ac_prog in gawk mawk nawk awk

+do

+  # Extract the first word of "$ac_prog", so it can be a program name with args.

+set dummy $ac_prog; ac_word=$2

+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5

+$as_echo_n "checking for $ac_word... " >&6; }