@@ -221,7 +221,6 @@ void GapsRunner::displayStatus(const std::string &type, unsigned nIterTotal)

         Rprintf("%s %d of %d, Atoms:%lu(%lu) Chi2 = %.2f\n\n", type.c_str(),

             mCurrentIter + 1, nIterTotal, mASampler.nAtoms(),

             mPSampler.nAtoms(), mASampler.chi2());

-

     }

 }

@@ -1,4 +1,4 @@

-PKG_CPPFLAGS =  -DSIMD -DGAPS_NDEBUG -msse4.2 -DBOOST_MATH_PROMOTE_DOUBLE_POLICY=0 -fopenmp

+PKG_CPPFLAGS =  -DSIMD -DGAPS_NDEBUG -msse4.2 -DBOOST_MATH_PROMOTE_DOUBLE_POLICY=0

 OBJECTS =   AtomicDomain.o \

             Cogaps.o \

             GapsRunner.o \

@@ -49,4 +49,4 @@ Archive& operator>>(Archive &ar, Vector &vec)

         ar >> vec.mValues[i];

     }

     return ar;

-}

\ No newline at end of file

+}

new file mode 100644

@@ -0,0 +1,5 @@

+#ifndef __COGAPS_MTX_PARSER_H__

+#define __COGAPS_MTX_PARSER_H__

+

+

+#endif

\ No newline at end of file

new file mode 100644

@@ -0,0 +1,5 @@

+#ifndef __COGAPS_TSV_PARSER_H__

+#define __COGAPS_TSV_PARSER_H__

+

+

+#endif

\ No newline at end of file

@@ -20,7 +20,14 @@

 #include <boost/math/distributions/gamma.hpp>

 #include <stdint.h>

-#include <omp.h>

+

+#ifdef __GAPS_OPENMP__

+    #include <omp.h>

+#else

+    typedef int omp_int_t;

+    inline omp_int_t omp_get_thread_num() { return 0; }

+    inline omp_int_t omp_get_max_threads() { return 1; }

+#endif

 #define Q_GAMMA_THRESHOLD 0.000001f

 #define Q_GAMMA_MIN_VALUE 0.0