# Generated by roxygen2: do not edit by hand

export(CoGAPS)
export(CoGapsFromCheckpoint)
export(GWCoGAPS)
export(GWCoGapsFromCheckpoint)
export(binaryA)
export(buildReport)
export(calcCoGAPSStat)
export(calcGeneGSStat)
export(calcZ)
export(cellMatchR)
export(computeGeneGSProb)
export(createGWCoGAPSSets)
export(createscCoGAPSSets)
export(gapsMapRun)
export(gapsRun)
export(patternMarkers)
export(patternMatch4Parallel)
export(plotAtoms)
export(plotDiag)
export(plotGAPS)
export(plotP)
export(reconstructGene)
export(residuals)
export(scCoGAPS)
import(doParallel)
import(foreach)
import(ggplot2)
import(shiny)
importFrom(RColorBrewer,brewer.pal)
importFrom(Rcpp,evalCpp)
importFrom(cluster,agnes)
importFrom(gplots,heatmap.2)
importFrom(gplots,plotCI)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.new)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,rainbow)
importFrom(graphics,abline)
importFrom(graphics,close.screen)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,matplot)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,screen)
importFrom(graphics,split.screen)
importFrom(graphics,title)
importFrom(methods,is)
importFrom(methods,new)
importFrom(reshape2,melt)
importFrom(stats,D)
importFrom(stats,as.dist)
importFrom(stats,as.hclust)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,hclust)
importFrom(stats,heatmap)
importFrom(stats,loess)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,update)
importFrom(stats,variable.names)
importFrom(stats,weighted.mean)
importFrom(utils,file_test)
importFrom(utils,read.table)
importFrom(utils,str)
importFrom(utils,write.table)
useDynLib(CoGAPS)