version: 3.3.40 date: 2019-2-22 author: Tom Sherman <tomsherman159@gmail.com> - more sensible default parameters - fixed critical bug introduced in 3.3.37 where fixedPatterns was ignored in the second phase of distributed runs version: 3.3.39 date: 2019-2-20 author: Tom Sherman <tomsherman159@gmail.com> - fix bug when reading mtx and not ignoring comments - allow setDistributedParams to be called to reset params version: 3.3.38 date: 2019-2-18 author: Tom Sherman <tomsherman159@gmail.com> - print message when each worker starts version: 3.3.37 date: 2019-2-18 author: Tom Sherman <tomsherman159@gmail.com> - move all critical parameters to CogapsParams class - allow RDS files to be passed for parameters - runs should be reproducible now with the data file and the parameters file version: 3.3.36 date: 2019-2-13 author: Tom Sherman <tomsherman159@gmail.com> - fix bug when recording initial phase of distributed cogaps version: 3.3.35 date: 2019-2-12 author: Tom Sherman <tomsherman159@gmail.com> - correctly subset gene/sample names version: 3.3.34 date: 2019-2-8 author: Tom Sherman <tomsherman159@gmail.com> - optionally disable checkpoints, disable on windows by default version: 3.3.33 date: 2019-2-7 author: Tom Sherman <tomsherman159@gmail.com> - internal design changes, should have no visible effect version: 3.3.32 date: 2019-2-4 author: Tom Sherman <tomsherman159@gmail.com> - allow "none" to be the argument type for distributed parameter version: 3.3.31 date: 2019-1-31 author: Tom Sherman <tomsherman159@gmail.com> - allow rds files to be passed version: 3.3.30 date: 2019-1-29 author: Tom Sherman <tomsherman159@gmail.com> - added check for value of params@distributed version: 3.3.29 date: 2019-1-22 author: Tom Sherman <tomsherman159@gmail.com> - check for user interrupt more often when reading data version: 3.3.28 date: 2019-1-15 author: Tom Sherman <tomsherman159@gmail.com> - return average asynchronous queue length in metadata version: 3.3.27 date: 2019-1-9 author: Tom Sherman <tomsherman159@gmail.com> - stop running examples for scCoGAPS/GWCoGAPS to reduce R CMD check time version: 3.3.26 date: 2019-1-8 author: Tom Sherman <tomsherman159@gmail.com> - allow for selectively disabling AVX instructions version: 3.3.25 date: 2019-1-7 author: Tom Sherman <tomsherman159@gmail.com> - fixed bugs with new build configuration version: 3.3.24 date: 2019-1-4 author: Tom Sherman <tomsherman159@gmail.com> - dont compile C++ unit tests by default version: 3.3.23 date: 2019-1-4 author: Tom Sherman <tomsherman159@gmail.com> - better handle setting nPatterns after cut version: 3.3.22 date: 2019-1-3 author: Tom Sherman <tomsherman159@gmail.com> - fixed bug when reading csv/tsv files and using sparseOptimization version: 3.3.21 date: 12-20-19 author: Tom Sherman <tomsherman159@gmail.com> - added PUMP back to CoGAPS version: 3.3.20 (jumped from 3.3.16) date: 2018-12-19 author: Tom Sherman <tomsherman159@gmail.com> - allow for fixed matrix in standard CoGAPS version: 3.3.16 date: 2018-11-22 author: Tom Sherman <tomsherman159@gmail.com> - flush output when printing time version: 3.3.15 date: 2018-11-22 author: Tom Sherman <tomsherman159@gmail.com> - clarify internal parameters version: 3.3.14 date: 2018-11-16 author: Tom Sherman <tomsherman159@gmail.com> - added how much time the run took in the worker output message version: 3.3.13 date: 2018-11-16 author: Tom Sherman <tomsherman159@gmail.com> - added a print message when a worker has finished during distributed CoGAPS version: 3.3.12 date: 2018-11-16 author: Tom Sherman <tomsherman159@gmail.com> - fixed bug where rows/cols would get re-ordered in GWCoGAPS/scCoGAPS version: 3.3.11 date: 2018-11-15 author: Tom Sherman <tomsherman159@gmail.com> - store chisq and atom count history in result object version: 3.3.10 date: 2018-11-15 author: Tom Sherman <tomsherman159@gmail.com> - display size of subsets created by GWCoGAPS/scCoGAPS