version: 3.3.40
date: 2019-2-22
author: Tom Sherman <tomsherman159@gmail.com>

    - more sensible default parameters
    - fixed critical bug introduced in 3.3.37 where fixedPatterns was
        ignored in the second phase of distributed runs

version: 3.3.39
date: 2019-2-20
author: Tom Sherman <tomsherman159@gmail.com>

    - fix bug when reading mtx and not ignoring comments
    - allow setDistributedParams to be called to reset params

version: 3.3.38
date: 2019-2-18
author: Tom Sherman <tomsherman159@gmail.com>

    - print message when each worker starts

version: 3.3.37
date: 2019-2-18
author: Tom Sherman <tomsherman159@gmail.com>

    - move all critical parameters to CogapsParams class
    - allow RDS files to be passed for parameters
    - runs should be reproducible now with the data file and the parameters file

version: 3.3.36
date: 2019-2-13
author: Tom Sherman <tomsherman159@gmail.com>

    - fix bug when recording initial phase of distributed cogaps

version: 3.3.35
date: 2019-2-12
author: Tom Sherman <tomsherman159@gmail.com>

    - correctly subset gene/sample names

version: 3.3.34
date: 2019-2-8
author: Tom Sherman <tomsherman159@gmail.com>

    - optionally disable checkpoints, disable on windows by default

version: 3.3.33
date: 2019-2-7
author: Tom Sherman <tomsherman159@gmail.com>

    - internal design changes, should have no visible effect

version: 3.3.32
date: 2019-2-4
author: Tom Sherman <tomsherman159@gmail.com>

    - allow "none" to be the argument type for distributed parameter

version: 3.3.31
date: 2019-1-31
author: Tom Sherman <tomsherman159@gmail.com>

    - allow rds files to be passed

version: 3.3.30
date: 2019-1-29
author: Tom Sherman <tomsherman159@gmail.com>

    - added check for value of params@distributed

version: 3.3.29
date: 2019-1-22
author: Tom Sherman <tomsherman159@gmail.com>

    - check for user interrupt more often when reading data

version: 3.3.28
date: 2019-1-15
author: Tom Sherman <tomsherman159@gmail.com>

    - return average asynchronous queue length in metadata

version: 3.3.27
date: 2019-1-9
author: Tom Sherman <tomsherman159@gmail.com>

    - stop running examples for scCoGAPS/GWCoGAPS to reduce R CMD check time

version: 3.3.26
date: 2019-1-8
author: Tom Sherman <tomsherman159@gmail.com>

    - allow for selectively disabling AVX instructions

version: 3.3.25
date: 2019-1-7
author: Tom Sherman <tomsherman159@gmail.com>

    - fixed bugs with new build configuration

version: 3.3.24
date: 2019-1-4
author: Tom Sherman <tomsherman159@gmail.com>

    - dont compile C++ unit tests by default

version: 3.3.23
date: 2019-1-4
author: Tom Sherman <tomsherman159@gmail.com>

    - better handle setting nPatterns after cut

version: 3.3.22
date: 2019-1-3
author: Tom Sherman <tomsherman159@gmail.com>

    - fixed bug when reading csv/tsv files and using sparseOptimization

version: 3.3.21
date: 12-20-19
author: Tom Sherman <tomsherman159@gmail.com>

    - added PUMP back to CoGAPS

version: 3.3.20 (jumped from 3.3.16)
date: 2018-12-19
author: Tom Sherman <tomsherman159@gmail.com>

    - allow for fixed matrix in standard CoGAPS

version: 3.3.16
date: 2018-11-22
author: Tom Sherman <tomsherman159@gmail.com>

    - flush output when printing time

version: 3.3.15
date: 2018-11-22
author: Tom Sherman <tomsherman159@gmail.com>

    - clarify internal parameters

version: 3.3.14
date: 2018-11-16
author: Tom Sherman <tomsherman159@gmail.com>

    - added how much time the run took in the worker output message

version: 3.3.13
date: 2018-11-16
author: Tom Sherman <tomsherman159@gmail.com>

    - added a print message when a worker has finished during distributed CoGAPS

version: 3.3.12 
date: 2018-11-16
author: Tom Sherman <tomsherman159@gmail.com>

    - fixed bug where rows/cols would get re-ordered in GWCoGAPS/scCoGAPS

version: 3.3.11
date: 2018-11-15
author: Tom Sherman <tomsherman159@gmail.com>

    - store chisq and atom count history in result object

version: 3.3.10
date: 2018-11-15
author: Tom Sherman <tomsherman159@gmail.com>

    - display size of subsets created by GWCoGAPS/scCoGAPS