\title{Plotter for GAPS decomposition results}

\description{Plots the A and P matrices obtained from the GAPS matrix decomposition.}

  plotGAPS(A, P, outputPDF="")

\item{A}{The amplitude matrix \eqn{{\bf{A}}} obtained from GAPS.} 
\item{P}{The pattern matrix \eqn{{\bf{P}}} obtained from GAPS.}
\item{outputPDF}{Name of an pdf file to which the results will be output.  (Optional; default="" will output plots to screen).}

If the plot option is true in \code{\link{CoGAPS}}, this function will be called automatically to plot results to the screen.

\author{Elana J. Fertig \email{efertig@jhmi.edu}}