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- train methods now exported and can be used. train generic imported from generics package. - simple params now have performanceType specified. - Fixes to training with multiple views but no aggregation. - Fix to parameter tuning in .doTrain.Dario Strbenac authored on 02/09/2022 06:10:10 |
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- train and predict functions created to allow training and prediction to be done independently. But they have the capabilities of crossValidate, such as multi-view methods. Implemented as S3 methods to work well with existing generics defined by R. - runTest, runTests and crossValidate now all utilise prepareData and allow passing in extra parameters for it. - getLocationsAndScales becomes private function. - All reference to targets parameter converted to useFeatures, which allows both the assay and the feature to be specified, rather than only the assay. - .MAEtoWideTable data flattening function is gone. Its functionality is incorporated into prepareData. - Parameter tuning in .doSelection of resubstitution mode now correctly uses training data as the test data instead of accidentally using the testing data.Dario Strbenac authored on 31/08/2022 11:45:02 |
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Merge branch 'master' of https://github.com/SydneyBioX/ClassifyRDario Strbenac authored on 25/08/2022 07:03:14 |
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- getFeatures functions added to simple params settings to extract selected features from within trained model where relevant. - Nearest Shrunken Centroid added as a simple params function and a classifier keyword option.Dario Strbenac authored on 25/08/2022 05:15:03 |
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- ROCplot's comparison value chosen automatically be default. - All tune parameter combinations now stored in result alongside the index of the best combination.Dario Strbenac authored on 25/08/2022 05:15:03 |
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Merge branch 'master' of https://github.com/SydneyBioX/ClassifyRDario Strbenac authored on 24/08/2022 11:07:28 |
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- All mcols prefixed with S4Vectors for Windows.Dario Strbenac authored on 24/08/2022 11:06:23 |
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Update rankingDifferentMeans.REllis Patrick authored on 23/08/2022 21:22:56 • GitHub committed on 23/08/2022 21:22:56 |
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- Fixed remainder of old-format parameter construction in examples and a couple of typos.Dario Strbenac authored on 22/08/2022 05:30:05 |
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- Restored runTest, runTests, ModellingParams, CrossValParams as public documented functions. Vignette also restored to explain them. - Constructors for params now expect a character keyword which is then converted into a function internally.Dario Strbenac authored on 21/08/2022 16:07:38 |
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Update DESCRIPTIONEllis Patrick authored on 18/08/2022 05:10:00 • GitHub committed on 18/08/2022 05:10:00 |
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Update crossValidate.REllis Patrick authored on 18/08/2022 05:07:13 • GitHub committed on 18/08/2022 05:07:13 |
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Update DESCRIPTIONEllis Patrick authored on 18/08/2022 04:40:55 • GitHub committed on 18/08/2022 04:40:55 |
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Update rankingDifferentMeans.REllis Patrick authored on 18/08/2022 04:35:55 • GitHub committed on 18/08/2022 04:35:55 |
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- All references to runTest and runTests in examples and vignette converted to crossValidate. End users should always use crossValidate from now on. - Minor fixes to code mistakes. - Performance tuning of training method parameters chosen within feature selection is now faithfully used in the model training.Dario Strbenac authored on 17/08/2022 13:55:15 |