... | ... |
@@ -76,6 +76,12 @@ |
76 | 76 |
#' @export |
77 | 77 |
setGeneric("ROCplot", function(results, ...) standardGeneric("ROCplot")) |
78 | 78 |
|
79 |
+#' @rdname ROCplot |
|
80 |
+#' @export |
|
81 |
+setMethod("ROCplot", "ClassifyResult", function(results, ...) { |
|
82 |
+ ROCplot(list(assay = results), ...) |
|
83 |
+}) |
|
84 |
+ |
|
79 | 85 |
#' @rdname ROCplot |
80 | 86 |
#' @export |
81 | 87 |
setMethod("ROCplot", "list", |
... | ... |
@@ -17,8 +17,7 @@ |
17 | 17 |
#' design to compare. Can be any characteristic that all results share. |
18 | 18 |
#' @param metric Default: "Sample Error". The sample-wise metric to plot. |
19 | 19 |
#' @param featureValues If not NULL, can be a named factor or named numeric |
20 |
-#' vector specifying some variable of interest to plot above the |
|
21 |
-#' heatmap. |
|
20 |
+#' vector specifying some variable of interest to plot above the heatmap. |
|
22 | 21 |
#' @param featureName A label describing the information in |
23 | 22 |
#' \code{featureValues}. It must be specified if \code{featureValues} is. |
24 | 23 |
#' @param metricColours If the outcome is categorical, a list of vectors of colours |
... | ... |
@@ -3,8 +3,11 @@ |
3 | 3 |
\name{ROCplot} |
4 | 4 |
\alias{ROCplot} |
5 | 5 |
\alias{ROCplot,list-method} |
6 |
+\alias{ROCplot,ClassifyResult-method} |
|
6 | 7 |
\title{Plot Receiver Operating Curve Graphs for Classification Results} |
7 | 8 |
\usage{ |
9 |
+\S4method{ROCplot}{ClassifyResult}(results, ...) |
|
10 |
+ |
|
8 | 11 |
\S4method{ROCplot}{list}( |
9 | 12 |
results, |
10 | 13 |
mode = c("merge", "average"), |
... | ... |
@@ -21,7 +21,7 @@ A function to perform fast cox proportional hazard model tests |
21 | 21 |
} |
22 | 22 |
\examples{ |
23 | 23 |
data(asthma) |
24 |
-time <- ppois(nrow(measurements),100) |
|
24 |
+time <- rpois(nrow(measurements),100) |
|
25 | 25 |
status <- sample(c(0,1), nrow(measurements), replace = TRUE) |
26 | 26 |
x = measurements |
27 | 27 |
y = cbind(time, status) |
... | ... |
@@ -61,8 +61,7 @@ design to compare. Can be any characteristic that all results share.} |
61 | 61 |
\item{metric}{Default: "Sample Error". The sample-wise metric to plot.} |
62 | 62 |
|
63 | 63 |
\item{featureValues}{If not NULL, can be a named factor or named numeric |
64 |
-vector specifying some variable of interest to plot underneath the above the |
|
65 |
-heatmap.} |
|
64 |
+vector specifying some variable of interest to plot above the heatmap.} |
|
66 | 65 |
|
67 | 66 |
\item{featureName}{A label describing the information in |
68 | 67 |
\code{featureValues}. It must be specified if \code{featureValues} is.} |