# Generated by roxygen2: do not edit by hand

S3method(predict,trainedByClassifyR)
S3method(train,DataFrame)
S3method(train,MultiAssayExperiment)
S3method(train,data.frame)
S3method(train,list)
S3method(train,matrix)
export(ClassifyResult)
export(CrossValParams)
export(FeatureSetCollection)
export(ModellingParams)
export(PredictParams)
export(ROCplot)
export(SelectParams)
export(TrainParams)
export(TransformParams)
export(actualOutcome)
export(allFeatureNames)
export(available)
export(calcCVperformance)
export(calcExternalPerformance)
export(chosenFeatureNames)
export(colCoxTests)
export(crossValidate)
export(distribution)
export(edgesToHubNetworks)
export(featureSetSummary)
export(finalModel)
export(generateCrossValParams)
export(generateModellingParams)
export(interactorDifferences)
export(models)
export(performance)
export(performancePlot)
export(plotFeatureClasses)
export(predictions)
export(prepareData)
export(rankingPlot)
export(runTest)
export(runTests)
export(sampleNames)
export(samplesMetricMap)
export(selectionPlot)
export(totalPredictions)
export(tunedParameters)
exportClasses(ClassifyResult)
exportClasses(CrossValParams)
exportClasses(FeatureSetCollection)
exportClasses(ModellingParams)
exportClasses(PredictParams)
exportClasses(SelectParams)
exportClasses(TrainParams)
exportClasses(TransformParams)
exportMethods("[")
exportMethods("[[")
exportMethods(ClassifyResult)
exportMethods(FeatureSetCollection)
exportMethods(PredictParams)
exportMethods(ROCplot)
exportMethods(SelectParams)
exportMethods(TrainParams)
exportMethods(TransformParams)
exportMethods(actualOutcome)
exportMethods(allFeatureNames)
exportMethods(calcCVperformance)
exportMethods(calcExternalPerformance)
exportMethods(chosenFeatureNames)
exportMethods(crossValidate)
exportMethods(distribution)
exportMethods(featureSetSummary)
exportMethods(finalModel)
exportMethods(interactorDifferences)
exportMethods(length)
exportMethods(models)
exportMethods(performance)
exportMethods(performancePlot)
exportMethods(plotFeatureClasses)
exportMethods(predictions)
exportMethods(prepareData)
exportMethods(rankingPlot)
exportMethods(runTest)
exportMethods(runTests)
exportMethods(sampleNames)
exportMethods(samplesMetricMap)
exportMethods(selectionPlot)
exportMethods(show)
exportMethods(totalPredictions)
exportMethods(tunedParameters)
import(BiocParallel)
import(MultiAssayExperiment)
import(grid)
import(methods)
import(utils)
importFrom(S4Vectors,as.data.frame)
importFrom(S4Vectors,do.call)
importFrom(S4Vectors,mcols)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(generics,train)
importFrom(rlang,sym)
importFrom(survival,Surv)
importFrom(survival,concordance)
importFrom(tidyr,gather)
useDynLib(ClassifyR, .registration = TRUE)