Package: Chicago
Type: Package
Title: CHiCAGO: Capture Hi-C Analysis of Genomic Organization
Version: 1.31.0
Author: Jonathan Cairns, Paula Freire Pritchett, Steven Wingett, Mikhail Spivakov
Maintainer: Mikhail Spivakov <mikhail.spivakov@lms.mrc.ac.uk>
Description: A pipeline for analysing Capture Hi-C data.
License: Artistic-2.0
Depends: R (>= 3.3.1), data.table
Imports: matrixStats, MASS, Hmisc, Delaporte, methods, grDevices, graphics, stats, utils
Suggests: argparser, BiocStyle, knitr, rmarkdown, PCHiCdata, testthat, Rsamtools,
  GenomicInteractions, GenomicRanges, IRanges, AnnotationHub
VignetteBuilder: knitr
biocViews: Epigenetics, HiC, Sequencing, Software