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Cepo ================ <img src="man/figures/Cepo_logo.png" align="right" width="225" height="250"/> ![R-CMD-check]( [![Codecov test coverage](]( Defining the identity of a cell is fundamental to understand the heterogeneity of cells to various environmental signals and perturbations. We present Cepo, a new method to explore cell identities from single-cell RNA-sequencing data using differential stability as a new metric to define cell identity genes. Cepo computes cell-type specific gene statistics pertaining to differential stable gene expression. ## Installation You can install the development version of *Cepo* that can be installed from GitHub using the `remotes` package: ``` r # install.packages("remotes") remotes::install_github("PYangLab/Cepo") ``` To also build the vignettes use: ``` r # install.packages("remotes") remotes::install_github("PYangLab/Cepo", dependencies = TRUE, build_vignettes = TRUE) ``` **NOTE:** Building the vignettes requires the installation of additional packages. ## Documentation The documentation for *Cepo* is available from <> To view the vignette and all the package documentation for the development version visit <>. ## Citing *Cepo* If you use *Cepo* in your work please cite our preprint ["Kim H.J., Wang K., Yang P. Cepo uncovers cell identity through differential stability. bioRxiv DOI:]( To find all source code related to the anlayses of our preprint please refer to <>. ## Developers The following individuals were involved in developing the Cepo package: - \[@HaniJieunKim\](<>) - \[@kevinwang09\](<>) - \[@PYangLab\](<>) ## Contact us If you have any enquiries, especially about using Cepo to analyse your data, please contact <>. We actively welcome any feedback and suggestions\!