1. CellaRepertorium
  2. .Rbuildignore
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Try out the R CMD check action.

Andrew McDavid authored on 29/09/2021 18:22:39
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.Rbuildignore
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@@ -15,3 +15,4 @@ manuscript/
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 R/immcantation-utils.R
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 ^WORDLIST$
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 ^doc$
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+^\.github$
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Rename cluster_name to cluster_pk (since that's what it is).

Andrew McDavid authored on 15/10/2020 14:27:43
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.Rbuildignore
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@@ -14,3 +14,4 @@ manuscript/
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 .ignore
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 R/immcantation-utils.R
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 ^WORDLIST$
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+^doc$
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LazyData: false hangover

Andrew McDavid authored on 30/09/2020 20:17:48
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.Rbuildignore
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@@ -1,11 +1,11 @@
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 ^.*\.Rproj$
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 ^\.Rproj\.user$
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 extdata/.*\.json$
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-^inst/script/*.csv
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-^inst/script/*.json
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-^inst/script/*.h5
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+script/.*\.csv$
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+script/.*\.json$
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+script/.*\.h5$
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 extdata/refdata-cellranger-vdj-GRCh38-alts-ensembl-2.0.0/
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-^doc$
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+^docs$
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 ^Meta$
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 manuscript/
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 ^_pkgdown\.yml$
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@@ -13,4 +13,4 @@ manuscript/
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 ^pkgdown$
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 .ignore
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 R/immcantation-utils.R
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-^inst/WORDLIST
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+^WORDLIST$
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move data-raw to inst/script

Andrew McDavid authored on 30/09/2020 18:47:33
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.Rbuildignore
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@@ -1,7 +1,9 @@
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 ^.*\.Rproj$
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 ^\.Rproj\.user$
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 extdata/.*\.json$
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-^data-raw$
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+^inst/script/*.csv
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+^inst/script/*.json
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+^inst/script/*.h5
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 extdata/refdata-cellranger-vdj-GRCh38-alts-ensembl-2.0.0/
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 ^doc$
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 ^Meta$
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@@ -10,6 +12,5 @@ manuscript/
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 ^docs$
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 ^pkgdown$
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 .ignore
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-README.Rmd
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 R/immcantation-utils.R
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-inst/WORDLIST
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+^inst/WORDLIST
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Rbuildignore WORDLIST Lazydata: FALSE Fix a few spelling errors

Andrew McDavid authored on 30/09/2020 18:11:48
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.Rbuildignore
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@@ -12,3 +12,4 @@ manuscript/
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 .ignore
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 README.Rmd
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 R/immcantation-utils.R
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+inst/WORDLIST
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Move data/manuscript prep to CellaRepertoriumData

Andrew McDavid authored on 05/09/2019 17:53:25
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.Rbuildignore
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@@ -11,5 +11,4 @@ manuscript/
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 ^pkgdown$
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 .ignore
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 README.Rmd
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-data/ccdb_bcell.rda
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 R/immcantation-utils.R
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Hopefully much faster canonicalization And more BiocCheck attempts

Andrew McDavid authored on 02/09/2019 05:02:39
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.Rbuildignore
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@@ -12,3 +12,4 @@ manuscript/
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 .ignore
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 README.Rmd
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 data/ccdb_bcell.rda
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+R/immcantation-utils.R
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Add full mouse BCR data

Andrew McDavid authored on 16/08/2019 20:01:05
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.Rbuildignore
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@@ -11,3 +11,4 @@ manuscript/
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 ^pkgdown$
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 .ignore
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 README.Rmd
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+data/ccdb_bcell.rda
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Doc and vignette updates

Andrew McDavid authored on 21/06/2019 04:13:35
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.Rbuildignore
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@@ -9,3 +9,5 @@ manuscript/
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 ^_pkgdown\.yml$
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 ^docs$
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 ^pkgdown$
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+.ignore
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+README.Rmd
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Use pkgdown to make website

Andrew McDavid authored on 19/06/2019 14:15:03
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.Rbuildignore
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@@ -6,3 +6,6 @@ extdata/refdata-cellranger-vdj-GRCh38-alts-ensembl-2.0.0/
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 ^doc$
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 ^Meta$
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 manuscript/
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+^_pkgdown\.yml$
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+^docs$
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+^pkgdown$
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Doc/example updates

Andrew McDavid authored on 19/06/2019 06:04:46
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.Rbuildignore
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@@ -5,3 +5,4 @@ extdata/.*\.json$
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 extdata/refdata-cellranger-vdj-GRCh38-alts-ensembl-2.0.0/
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 ^doc$
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 ^Meta$
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+manuscript/
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Doc/data/NAMESPACE updates

Andrew McDavid authored on 11/06/2019 18:49:27
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.Rbuildignore
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@@ -3,3 +3,5 @@
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 extdata/.*\.json$
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 ^data-raw$
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 extdata/refdata-cellranger-vdj-GRCh38-alts-ensembl-2.0.0/
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+^doc$
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+^Meta$
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Update docs Bump version Require 3.5 (as data was serialized in v3)

Andrew McDavid authored on 02/06/2019 04:33:47
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.Rbuildignore
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@@ -1,3 +1,5 @@
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 ^.*\.Rproj$
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 ^\.Rproj\.user$
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 extdata/.*\.json$
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+^data-raw$
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+extdata/refdata-cellranger-vdj-GRCh38-alts-ensembl-2.0.0/
Browse code

Pairing / canonicalization methods now in separate file

Provide a chain-canonicalization method which is now used by default in pairing_tables

Some doc updates, too.

Andrew McDavid authored on 02/04/2019 16:08:49
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.Rbuildignore
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new file mode 100644
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@@ -0,0 +1,3 @@
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+^.*\.Rproj$
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+^\.Rproj\.user$
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+extdata/.*\.json$