# CellaRepertorium
This package contains methods for clustering and analyzing single cell RepSeq data, especially as generated by [10X genomics VDJ solution](https://support.10xgenomics.com/single-cell-vdj).
## Functions
* `cdhit`: An R interface to CDhit, which was originally ported by Thomas Lin Pedersen.
* `fine_cluster`: clustering CDR3 by edit distances (possibly using empirical amino acid substitution matrices)
* `cluster_permute_test`: permutation tests of cluster statistics