# Generated by roxygen2: do not edit by hand

S3method(print,PermuteTest)
S3method(print,PermuteTestList)
S3method(tidy,PermuteTest)
S3method(tidy,PermuteTestList)
export(ContigCellDB)
export(ContigCellDB_10XVDJ)
export(canonicalize_cell)
export(canonicalize_cluster)
export(ccdb_join)
export(cdhit)
export(cdhit_ccdb)
export(cland)
export(cluster_filterset)
export(cluster_germline)
export(cluster_logistic_test)
export(cluster_permute_test)
export(cluster_plot)
export(cluster_test_by)
export(cross_tab_tbl)
export(crosstab_by_celltype)
export(entropy)
export(enumerate_pairing)
export(equalize_ccdb)
export(fancy_name_contigs)
export(filter_cdb)
export(fine_cluster_seqs)
export(fine_clustering)
export(generate_pseudobulk)
export(guess_celltype)
export(ig_chain_recode)
export(left_join_warn)
export(map_axis_labels)
export(modal_category)
export(mutate_cdb)
export(np)
export(pairing_tables)
export(plot_cluster_factors)
export(plot_permute_test)
export(purity)
export(rank_chain_ccdb)
export(rank_prevalence_ccdb)
export(right_join_warn)
export(split_cdb)
export(tcr_chain_recode)
export(tidy)
export(tidy.PermuteTest)
export(tidy.PermuteTestList)
exportMethods("$")
exportMethods("$<-")
exportMethods(rbind)
import(Biostrings)
importFrom(BiocGenerics,NCOL)
importFrom(BiocGenerics,NROW)
importFrom(BiocGenerics,ncol)
importFrom(BiocGenerics,nrow)
importFrom(Rcpp,evalCpp)
importFrom(S4Vectors,List)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,rbind)
importFrom(dplyr,"%>%")
importFrom(dplyr,anti_join)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,right_join)
importFrom(dplyr,select)
importFrom(dplyr,semi_join)
importFrom(dplyr,summarize)
importFrom(dplyr,ungroup)
importFrom(generics,tidy)
importFrom(methods,"slot<-")
importFrom(methods,as)
importFrom(methods,new)
importFrom(methods,slot)
importFrom(methods,validObject)
importFrom(rlang,"%||%")
importFrom(rlang,":=")
importFrom(rlang,.data)
importFrom(rlang,sym)
importFrom(rlang,syms)
importFrom(stats,as.dist)
importFrom(stats,as.formula)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,na.fail)
importFrom(stats,sd)
importFrom(stringr,str_c)
importFrom(stringr,str_length)
importFrom(stringr,str_replace_all)
importFrom(tibble,as_data_frame)
importFrom(tibble,as_tibble)
importFrom(tibble,data_frame)
importFrom(tibble,tibble)
importFrom(utils,data)
importFrom(utils,packageVersion)
useDynLib(CellaRepertorium)