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README.md
# CellaRepertorium This package contains methods for clustering and analyzing single cell RepSeq data, especially as generated by [10X genomics VDJ solution](https://support.10xgenomics.com/single-cell-vdj). ## Functions * `cdhit`: An R interface to CDhit, which was originally ported by Thomas Lin Pedersen. * `fine_cluster`: clustering CDR3 by edit distances (possibly using empirical amino acid substitution matrices) * `cluster_permute_test`: permutation tests of cluster statistics