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NAMESPACE 100644 1 kb
README.md 100644 3 kb
appveyor.yml 100644 1 kb
README.md
------------------------------------------------------------------------ # CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation, and visualization [![AppVeyor Build Status](https://ci.appveyor.com/api/projects/status/github/taoshengxu/CancerSubtypes?branch=master&svg=true)](https://ci.appveyor.com/project/taoshengxu/CancerSubtypes) [![bioc](http://www.bioconductor.org/shields/downloads/CancerSubtypes.svg)](http://bioconductor.org/packages/stats/bioc/CancerSubtypes.html) [![bioc](http://www.bioconductor.org/shields/years-in-bioc/CancerSubtypes.svg)](http://bioconductor.org/packages/CancerSubtypes/) [![bioc](http://bioconductor.org/shields/availability/devel/CancerSubtypes.svg)](http://bioconductor.org/packages/CancerSubtypes/) [![bioc](http://www.bioconductor.org/shields/build/release/bioc/CancerSubtypes.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/CancerSubtypes.html) The R/Bioconductor package `CancerSubtypes` integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi-omics data, such as gene expression, miRNA expression, DNA methylation and others. ------------------------------------------------------------------------ ## Installing CancerSubtypes ```{r,eval=FALSE,warning=FALSE,message=FALSE} devtools::install_github("taoshengxu/CancerSubtypes") ``` ------------------------------------------------------------------------ ## Manual Tutorial and examples can be found [here](https://bioconductor.org/packages/devel/bioc/vignettes/CancerSubtypes/inst/doc/CancerSubtypes-vignette.html). <!--(http://htmlpreview.github.io/?https://github.com/taoshengxu/Documents/blob/master/CancerSubtypes-vignette.html)--> ------------------------------------------------------------------------ ## Citation Please cite the following article when using `CancerSubtypes`: [![doi](https://img.shields.io/badge/doi-10.1093/bioinformatics/btx378-green.svg?style=flat)](https://doi.org/10.1093/bioinformatics/btx378) [![citation](https://img.shields.io/badge/cited%20by-34-green.svg?style=flat)](https://doi.org/10.1093/bioinformatics/btx378) [![Altmetric](https://img.shields.io/badge/Altmetric-2-green.svg?style=flat)](https://www.altmetric.com/details/21038105) Xu, T. et al. CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation, and visualization. Bioinformatics (2017) [doi:10.1093/bioinformatics/btx378](https://doi.org/10.1093/bioinformatics/btx378).