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# CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation, and visualization
[](https://ci.appveyor.com/project/taoshengxu/CancerSubtypes)
[](http://bioconductor.org/packages/stats/bioc/CancerSubtypes.html)
[](http://bioconductor.org/packages/CancerSubtypes/)
[](http://bioconductor.org/packages/CancerSubtypes/)
[](http://bioconductor.org/checkResults/release/bioc-LATEST/CancerSubtypes.html)
The R/Bioconductor package `CancerSubtypes` integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi-omics data, such as gene expression, miRNA expression, DNA methylation and others.
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## Installing CancerSubtypes
```{r,eval=FALSE,warning=FALSE,message=FALSE}
devtools::install_github("taoshengxu/CancerSubtypes")
```
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## Manual
Tutorial and examples can be found [here](https://bioconductor.org/packages/devel/bioc/vignettes/CancerSubtypes/inst/doc/CancerSubtypes-vignette.html).
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## Citation
Please cite the following article when using `CancerSubtypes`:
[](https://doi.org/10.1093/bioinformatics/btx378) [](https://doi.org/10.1093/bioinformatics/btx378) [](https://www.altmetric.com/details/21038105)
Xu, T. et al. CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation, and visualization. Bioinformatics (2017) [doi:10.1093/bioinformatics/btx378](https://doi.org/10.1093/bioinformatics/btx378).
