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<!-- badges: start --> [![R-CMD-check-bio](]( [![codecov](]( [![License: Artistic-2.0](]( <!-- badges: end --> <p align="center"> <img src="man/figures/CNVMetrics_text.jpg" alt="CNVMetrics"> <img src="man/figures/CNVMetrics.png" align="right" alt="" width="120" /> </p> The **_CNVMetrics_** package offers multiple quantitative metrics of similarity between copy number profiles. Among these are metrics based on CNV status calls only (amplification/deletion status) or on the level of amplification/deletion. In addition, a visualization tool is provided to explore resulting metrics. ## Citing ## If you use this package for a publication, we would ask you to cite the following: >Belleau P, DeschĂȘnes A, Beyaz S et al. CNVMetrics package: Quantifying similarity between copy number profiles [version 1; not peer reviewed]. F1000Research 2021, 10:737 (slides) (doi: 10.7490/f1000research.1118704.1) [F1000Research poster]( ## Authors ## [Astrid Desch&ecirc;nes]( "Astrid Desch&ecirc;nes"), [Pascal Belleau]( "Pascal Belleau"), [David A. Tuveson]( "David A. Tuveson") and [Alexander Krasnitz]( "Alexander Krasnitz") ## Bioconductor Package ## [![Bioconductor Time](]( The **_CNVMetrics_** package is now an official package of [Bioconductor]( The current release can be directly downloaded from their website: [Current release]( However, all official releases can be downloaded from this site: [All releases]( ## Documentation ## [CNVMetrics Website]( [CNVMetrics Get Started]( ## Installation ## To install this package from [Bioconductor](, start R (version "4.2") and enter: if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("CNVMetrics") To install the latest version accessible using the [devtools]( package: ## Load required package library(devtools) ## Install the latest version of CNVMetrics devtools::install_github('KrasnitzLab/CNVMetrics') ## License ## This package and the underlying **_CNVMetrics_** code are distributed under the Artistic license 2.0. You are free to use and redistribute this software. For more information on Artistic 2.0 License see []( ## Bugs/Feature requests ## [Please contact us]( for bug fixes or with feature requests. Thanks!