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CNEr.Rmd 100755 29 kb
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PairwiseWholeGenomeAlignment.Rmd 100755 9 kb
# CNEr Conserved Noncoding Elements (CNEs) Identification and Visualisation ## Installation of the stable version of `CNEr` from Bioconductor ```R if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("CNEr") ``` ## Installation of the development version of `CNEr` from github **Prerequsite**: * Mac: Install "Command Line Tools" via `gcc` on terminal * Linux: Install a compiler and various development libraries (details vary across different flavors of Linux). * Windows: Install [Rtools]( ```R devtools::install_github("ge11232002/CNEr") ``` ## Vignette Latest vignette is available at <b>Citation</b>: ``` G. Tan, D. Polychronopoulos, B.Lenhard: CNEr: A toolkit for exploring extreme noncoding conservation. PLoS Comput Biol. 2019 Aug 26;15(8):e1006940. doi: 10.1371/journal.pcbi.1006940. eCollection 2019 Aug. ```