Name Mode Size
..
Ancora.R 100644 10 kb
AssemblyStats.R 100644 1 kb
Axt-class.R 100644 9 kb
Axt-methods.R 100644 5 kb
CNE-class.R 100644 4 kb
CNE-methods.R 100644 3 kb
DB.R 100644 1 kb
GO.R 100644 5 kb
GRB.R 100644 4 kb
GRangePairs-class.R 100644 7 kb
GRangePairs-methods.R 100644 5 kb
IO-methods.R 100644 12 kb
KEGG.R 100644 2 kb
WholeGenomeAlignment.R 100644 17 kb
ceScan.R 100644 17 kb
makeGeneDbFromUCSC.R 100644 5 kb
plot.R 100644 2 kb
scoringMatrix.R 100644 4 kb
subAxt-methods.R 100644 4 kb
utils.R 100644 10 kb
README.md
# CNEr Conserved Noncoding Elements (CNEs) Identification and Visualisation ## Installation of the stable version of `CNEr` from Bioconductor ```R if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("CNEr") ``` ## Installation of the development version of `CNEr` from github **Prerequsite**: * Mac: Install "Command Line Tools" via `gcc` on terminal * Linux: Install a compiler and various development libraries (details vary across different flavors of Linux). * Windows: Install [Rtools](https://cran.r-project.org/bin/windows/Rtools/). ```R devtools::install_github("ge11232002/CNEr") ``` ## Vignette Latest vignette is available at http://rpubs.com/yang2/CNEr3