Dimitris Polychronopoulos authored on 16/11/2019 15:45:49
• GitHub committed on 16/11/2019 15:45:49
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@@ -22,3 +22,11 @@ devtools::install_github("ge11232002/CNEr")
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## Vignette |
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Latest vignette is available at http://rpubs.com/yang2/CNEr3 |
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+ |
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+<b>Citation</b>: |
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+ |
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+``` |
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+G. Tan, D. Polychronopoulos, B.Lenhard: |
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+CNEr: A toolkit for exploring extreme noncoding conservation. |
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+PLoS Comput Biol. 2019 Aug 26;15(8):e1006940. doi: 10.1371/journal.pcbi.1006940. eCollection 2019 Aug. |
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+``` |
LiNk-NY authored on 30/08/2018 17:46:19
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@@ -4,8 +4,9 @@ Conserved Noncoding Elements (CNEs) Identification and Visualisation |
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## Installation of the stable version of `CNEr` from Bioconductor |
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```R |
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-source("https://bioconductor.org/biocLite.R")
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-biocLite("CNEr")
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+if (!requireNamespace("BiocManager", quietly=TRUE))
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+ install.packages("BiocManager")
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+BiocManager::install("CNEr")
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``` |
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## Installation of the development version of `CNEr` from github |
Ge Tan authored on 31/08/2016 11:52:25
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@@ -9,8 +9,11 @@ biocLite("CNEr")
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``` |
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## Installation of the development version of `CNEr` from github |
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+**Prerequsite**: |
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-* **Mac and Linux**: |
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+ * Mac: Install "Command Line Tools" via `gcc` on terminal |
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+ * Linux: Install a compiler and various development libraries (details vary across different flavors of Linux). |
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+ * Windows: Install [Rtools](https://cran.r-project.org/bin/windows/Rtools/). |
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```R |
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devtools::install_github("ge11232002/CNEr")
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Ge Tan authored on 15/12/2015 18:11:39
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new file mode 100644 |
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@@ -0,0 +1,17 @@ |
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+# CNEr |
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+Conserved Noncoding Elements (CNEs) Identification and Visualisation |
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+ |
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+## Installation of the stable version of `CNEr` from Bioconductor |
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+ |
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+```R |
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+source("https://bioconductor.org/biocLite.R")
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+biocLite("CNEr")
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+``` |
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+ |
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+## Installation of the development version of `CNEr` from github |
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+ |
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+* **Mac and Linux**: |
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+ |
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+```R |
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+devtools::install_github("ge11232002/CNEr")
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+``` |