July 12, 2016
View 0429aaf

fasta.info() was renamed fasta.seqlengths() in Biostrings. Change code accordingly.

Herve Pages authored on 12/07/2016 06:56:18
May 15, 2016
View beddae3

Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more.

Dan Tenenbaum authored on 15/05/2016 20:18:19
May 11, 2016
View 7716c18

Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included.

Dan Tenenbaum authored on 11/05/2016 23:15:25
May 3, 2016
View 2492627

Creating branch for BioC 3.3 release.

Dan Tenenbaum authored on 03/05/2016 21:26:31
View 7df48c4

Bump versions prior to creation of 3.3 branch

Dan Tenenbaum authored on 03/05/2016 21:20:18
April 12, 2016
View 4cca125

version 1.7.13

Ge Tan authored on 12/04/2016 13:30:05
March 31, 2016
View 4e4cea3

version 1.7.11

Ge Tan authored on 31/03/2016 19:16:08
March 2, 2016
View 3515eae

version 1.7.9

Ge Tan authored on 02/03/2016 15:20:50
February 12, 2016
View 67627b6

Use 'drop.self' and 'drop.redundant' arguments instead of 'ignoreSelf' and 'ignoreRedundant' when calling findOverlaps() with a query and no subject.

Herve Pages authored on 12/02/2016 03:00:44
January 29, 2016
View 3e9b2d1

elementLengths was renamed -> elementNROWS in S4Vectors (new name reflects TRUE semantic, old name will be deprecated soon)

Herve Pages authored on 29/01/2016 01:22:03
December 15, 2015
View 8cfe0cb

version 1.7.2. Fix a bug caused by "format"

Ge Tan authored on 15/12/2015 16:40:56
November 6, 2015
View 2a7c078

version 1.7.1. Fix vignette and update URL

Ge Tan authored on 06/11/2015 13:18:48
October 13, 2015
View 2f20c7f

Bumped version number of all packages after creation of 3.2 branch.

Dan Tenenbaum authored on 13/10/2015 19:59:53
View 858210b

Bumped versions of all packages prior to creating 3.2 branch.

Dan Tenenbaum authored on 13/10/2015 19:36:05
October 8, 2015
View 652213a

CNEr 1.5.6.

Ge Tan authored on 08/10/2015 13:54:52