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@@ -111,9 +111,10 @@ lastz <- function(assemblyTarget, assemblyQuery,
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lastzOptions <- list(
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near=paste0("C=0 E=150 H=0 K=4500 L=3000 M=254 O=600 T=2 Y=15000 Q=",
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matrixFile),
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- medium=paste0("C=0 E=30 H=0 K=3000 L=3000 M=50 O=400 T=1 Y=9400",
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+ medium=paste0("C=0 E=30 H=0 K=3000 L=3000 M=50 O=400 T=1 Y=9400 Q=",
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matrixFile),
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- far=paste0("C=0 E=30 H=2000 K=2200 L=6000 M=50 O=400 T=2 Y=3400 Q=", matrixFile)
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+ far=paste0("C=0 E=30 H=2000 K=2200 L=6000 M=50 O=400 T=2 Y=3400 Q=",
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+ matrixFile)
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)
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message("Starting lastz")
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