@@ -55,7 +55,7 @@ Then we can run `lastz` function to generate the _lav_ files.

 assemblyDir <- "/Users/gtan/OneDrive/Project/CSC/CNEr/2bit"

 axtDir <- "/Users/gtan/OneDrive/Project/CSC/CNEr/axt"

 assemblyTarget <- file.path(system.file("extdata",

-                              package="BSgenome.Drerio.UCSC.danRer10"),

+                            package="BSgenome.Drerio.UCSC.danRer10"),

                             "single_sequences.2bit")

 assemblyQuery <- file.path(system.file("extdata",

                                        package="BSgenome.Hsapiens.UCSC.hg38"),

@@ -156,7 +156,7 @@ netSyntenicFile <- chainNetSyntenic(allPreChain, assemblyTarget, assemblyQuery,

                                                       sub("\\.2bit$", "",

                                                       basename(assemblyQuery),

                                                       ignore.case = TRUE),

-                                              ".noClass.net")),

+                                               ".noClass.net")),

                      binaryChainNet="chainNet", binaryNetSyntenic="netSyntenic")

 ```

@@ -184,5 +184,4 @@ document was compiled:

 ```{r sessionInfo, echo=FALSE}

 sessionInfo()

-```

-

+```

\ No newline at end of file