| ... | ... |
@@ -1,12 +1,13 @@ |
| 1 | 1 |
Package: CNEr |
| 2 |
-Version: 1.11.8 |
|
| 3 |
-Date: 2017-04-10 |
|
| 2 |
+Version: 1.13.1 |
|
| 3 |
+Date: 2017-07-03 |
|
| 4 | 4 |
Title: CNE Detection and Visualization |
| 5 | 5 |
Description: Large-scale identification and advanced visualization |
| 6 | 6 |
of sets of conserved noncoding elements. |
| 7 | 7 |
Author: Ge Tan <ge_tan@live.com> |
| 8 | 8 |
Maintainer: Ge Tan <ge_tan@live.com> |
| 9 | 9 |
Imports: Biostrings (>= 2.33.4), |
| 10 |
+ DBI (>= 0.7), |
|
| 10 | 11 |
RSQLite (>= 0.11.4), |
| 11 | 12 |
GenomeInfoDb (>= 1.1.3), |
| 12 | 13 |
GenomicRanges (>= 1.23.16), |
| ... | ... |
@@ -27,7 +28,7 @@ Imports: Biostrings (>= 2.33.4), |
| 27 | 28 |
GO.db (>= 3.3.0), |
| 28 | 29 |
R.utils (>= 2.3.0), |
| 29 | 30 |
KEGGREST (>= 1.14.0) |
| 30 |
-Depends: R (>= 3.2.2) |
|
| 31 |
+Depends: R (>= 3.4) |
|
| 31 | 32 |
Suggests: Gviz (>= 1.7.4), |
| 32 | 33 |
BiocStyle, |
| 33 | 34 |
knitr, |
| ... | ... |
@@ -19,7 +19,8 @@ importMethodsFrom(GenomeInfoDb, seqnames, seqlengths, seqinfo, as.data.frame, |
| 19 | 19 |
importMethodsFrom(GenomicRanges, reduce, "strand<-", strand, start, end, |
| 20 | 20 |
findOverlaps, coverage, grglist) |
| 21 | 21 |
importMethodsFrom(XVector, subseq) |
| 22 |
-importMethodsFrom(RSQLite, dbGetQuery, dbConnect, dbDisconnect, dbWriteTable) |
|
| 22 |
+importMethodsFrom(DBI, dbGetQuery) |
|
| 23 |
+importMethodsFrom(RSQLite, dbConnect, dbDisconnect, dbWriteTable) |
|
| 23 | 24 |
importMethodsFrom(methods, initialize, show) |
| 24 | 25 |
importMethodsFrom(Biostrings, compareStrings) |
| 25 | 26 |
importMethodsFrom(S4Vectors, Rle, isConstant, runmean, elementNROWS, first, |
