Package: CNEr 
Version: 1.8.3
Date: 2016-04-12
Title: CNE Detection and Visualization
Description: Large-scale identification and advanced visualization 
             of sets of conserved noncoding elements.
Author: Ge Tan <ge.tan09@imperial.ac.uk> 
Maintainer: Ge Tan <ge.tan09@imperial.ac.uk>
Imports: Biostrings(>= 2.33.4),
         RSQLite(>= 0.11.4),
         GenomeInfoDb(>= 1.1.3),
         GenomicRanges(>= 1.23.16),
         rtracklayer(>= 1.25.5),
         XVector(>= 0.5.4),
         DBI(>= 0.2-7),
         GenomicAlignments(>= 1.1.9),
         methods, 
         S4Vectors(>= 0.9.25),
         IRanges(>= 2.5.27),
         readr(>= 0.2.2),
         BiocGenerics,
         tools,
         parallel
Depends: R (>= 3.2.2)
Suggests: Gviz(>= 1.7.4),
          BiocStyle,
          knitr,
          rmarkdown,
          testthat
LinkingTo: S4Vectors, IRanges, XVector
VignetteBuilder: knitr
License: GPL-2 | file LICENSE
License_restricts_use: yes
URL: https://github.com/ge11232002/CNEr
BugReports: https://github.com/ge11232002/CNEr/issues
Type: Package
biocViews: GeneRegulation, Visualization, DataImport
NeedsCompilation: yes
LazyData: no
Collate: 
        GRangePairs-class.R
        AllGenerics.R
        AllClasses.R
        utils.R
        ceScan.R
        plot.R 
        makeGeneDbFromUCSC.R
        io.R
        scoringMatrix.R
        subAxt-methods.R
        Axt-methods.R
        DB.R
        AssemblyStats.R
        GRB.R
        WholeGenomeAlignment.R