Package: CNEr 
Version: 1.6.2
Date: 2015-12-15
Title: CNE Detection and Visualization
Description: Large-scale identification and advanced visualization 
             of sets of conserved noncoding elements.
Author: Ge Tan <> 
Maintainer: Ge Tan <>
Imports: Biostrings(>= 2.33.4), RSQLite(>= 0.11.4), GenomeInfoDb(>= 1.1.3), 
         GenomicRanges(>= 1.17.11), rtracklayer(>= 1.25.5), XVector(>= 0.5.4), 
         DBI(>= 0.2-7), GenomicAlignments(>= 1.1.9), methods, 
         S4Vectors(>= 0.0.4), IRanges(>= 1.99.6)
Depends: R (>= 3.0.2)
Suggests: Gviz(>= 1.7.4), RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
LinkingTo: S4Vectors, IRanges, XVector
VignetteBuilder: knitr
License: GPL-2 | file LICENSE
License_restricts_use: yes
Type: Package
biocViews: GeneRegulation, Visualization, DataImport
NeedsCompilation: yes
LazyData: no
Collate: AllGenerics.R AllClasses.R utils.R ceScan.R plot.R 
         makeGeneDbFromUCSC.R io.R scoringMatrix.R subAxt-methods.R
         Axt-methods.R DB.R AssemblyStats.R GRB.R