Package: CNEr 
Version: 1.0.0
Date: 2014-03-12
Title: CNE detection and visualization.
Description: Large-scale identification and advanced visualization of sets of conserved noncoding elements.
Author: Ge Tan <> 
Maintainer: Ge Tan <>
Imports: Biostrings(>= 2.26.3), RSQLite(>= 0.11.4), GenomicRanges(>= 1.12.5), rtracklayer(>= 1.20.4), XVector(>= 0.2.0), DBI(>= 0.2-7), GenomicAlignments(>= 0.99.17), methods, IRanges(>= 1.19.38)
Depends: R (>= 3.0.2)
Suggests: Gviz(>= 1.7.4), RUnit, BiocGenerics
LinkingTo: IRanges, XVector
System Requirements: blat
License: GPL-2 | file LICENSE
License_restricts_use: yes
Type: Package
biocViews: GeneRegulation, Visualization, DataImport
NeedsCompilation: yes
LazyData: no
Collate: AllGenerics.R AllClasses.R utils.R ceScan.R plot.R 
         makeGeneDbFromUCSC.R io.R scoringMatrix.R subAxt-methods.R