# CNEr
Conserved Noncoding Elements (CNEs) Identification and Visualisation
## Installation of the stable version of `CNEr` from Bioconductor
```R
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("CNEr")
```
## Installation of the development version of `CNEr` from github
**Prerequsite**:
* Mac: Install "Command Line Tools" via `gcc` on terminal
* Linux: Install a compiler and various development libraries (details vary across different flavors of Linux).
* Windows: Install [Rtools](https://cran.r-project.org/bin/windows/Rtools/).
```R
devtools::install_github("ge11232002/CNEr")
```
## Vignette
Latest vignette is available at http://rpubs.com/yang2/CNEr3
<b>Citation</b>:
```
G. Tan, D. Polychronopoulos, B.Lenhard:
CNEr: A toolkit for exploring extreme noncoding conservation.
PLoS Comput Biol. 2019 Aug 26;15(8):e1006940. doi: 10.1371/journal.pcbi.1006940. eCollection 2019 Aug.
```