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  • bb90e82 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:32:25 -0400;
  • a252ff1 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:32:25 -0400;
  • 2497eb7 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:20:43 -0400;
  • b59cc3d (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:20:43 -0400;
  • b2b05dd bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:42:41 -0400;
  • 6764dff (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:42:41 -0400;
  • c73f1a1 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 09:49:33 -0400;
  • da07dbc (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 09:49:33 -0400;
  • 207d17f bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:04:40 -0400;
  • 27c7682 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:04:40 -0400;
  • baefbc8 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:03:40 +0000;
  • 39abab6 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:03:40 +0000;
  • 355f3d6 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:54:41 +0000;
  • 1d2812a (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:54:41 +0000;
  • 6c66f36 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:44:00 +0000;
  • d0de582 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:44:00 +0000;
  • a935732 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:36:33 -0400;
  • 8b920f6 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:36:33 -0400;
  • 56b60be bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:20:11 +0000;
  • c609d4b (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:20:11 +0000;
  • 3c8ea01 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:35:08 -0400;
  • 7f45642 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:08 -0400;
  • 41f9ec8 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:10:53 -0400;
  • 27d2f41 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:12 -0400;
  • 0c04a62 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:28 -0400;
  • e68bd33 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:45 -0400;
  • 973f07a bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:37 -0400;
  • 049b5fa (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:12 -0400;
  • 0f68ced bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:09 -0400;
  • 8439e79 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:27 -0400;
  • 76a27df bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 1b8fa52 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • f395236 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 884149b bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 7ec458b (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 541fdd6 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • c66bb30 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 4fb3175 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 84dd521 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • c593dd4 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 8d29140 (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 0375c0c Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 72b092b Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 08dd1bc (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • 09ba84d Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 61510c2 Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • 265f2ab (origin/RELEASE_3_0, RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • 1e2b83b Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • 2118ee2 Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • 37c4a2c (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • f960d17 First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • 82af295 rename inst/doc to vignettes and bump version by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-11-01 20:10:12 +0000;
  • 094a124 bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • b7e0044 (origin/RELEASE_2_13, RELEASE_2_13) Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • 5ae0407 bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • b9d60aa Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
  • c95ed80 (origin/RELEASE_2_12, RELEASE_2_12) Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
  • e883998 bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
  • ea1365c @<- has been moved from methods to base, so it no longer needs to be imported in package NAMESPACEs. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-01-04 21:18:09 +0000;
  • 608af38 bump package versions after creating 2.11 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:43:56 +0000;
  • b8f0dc3 (origin/RELEASE_2_11, RELEASE_2_11) Creating branch for BioC 2.11 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:37:11 +0000;
  • 8d7ee0b Bump all packages before creating 2.11 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:16:24 +0000;
  • 48e1bbe Fixed call to make_cghRaw by Bart P.P. van Houte <bvhoute@few.vu.nl> 2012-06-12 12:47:31 +0000;
  • b0e8adf bumped version numbers after creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:15:56 +0000;
  • 512f355 (origin/RELEASE_2_10, RELEASE_2_10) Creating branch for BioC 2.10 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:10:45 +0000;
  • c0c54ea first version bump prior to creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:05:02 +0000;
  • 2ed63c9 typo corrected by Bart P.P. van Houte <bvhoute@few.vu.nl> 2012-03-20 11:44:47 +0000;
  • 84a14ff typo corrected by Bart P.P. van Houte <bvhoute@few.vu.nl> 2012-03-20 11:44:24 +0000;
  • 3ca9005 typo corrected by Bart P.P. van Houte <bvhoute@few.vu.nl> 2012-03-19 17:18:21 +0000;
  • 95ba6c2 max.losses can now be a vector with one threshold for each sample by Bart P.P. van Houte <bvhoute@few.vu.nl> 2012-03-19 17:16:49 +0000;
  • 0903d04 version bump for start of 2.10 development cycle by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:12:28 +0000;
  • 20e4ba1 (origin/RELEASE_2_9, RELEASE_2_9) Creating branch for BioC 2.9 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:05:58 +0000;
  • fa239ab bumped package version numbers prior to creating 2.9 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 22:59:03 +0000;
  • 671928d Formatted code by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-08-03 10:01:43 +0000;
  • d57bc87 integrated function extractNormals into localLowess to save memory by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-08-01 16:06:28 +0000;
  • 3896828 Fixed warning in Vignette by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-07-25 10:52:46 +0000;
  • 6ae7672 Fixed duplicate parameters by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-07-22 12:52:20 +0000;
  • bb11d37 Direct warning unused parameters by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-07-22 10:34:59 +0000;
  • a1f7e04 Inproved parameter passing by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-07-20 16:23:01 +0000;
  • 1ba296d Fixed parameter passing by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-07-20 12:42:46 +0000;
  • e32c5c5 Added ... to pass arguments to DNAcopy and/or CGHcall by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-07-20 12:33:26 +0000;
  • 11bf9fc Bumped version numbers again for new BioC 2.9 devel cycle. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-04-13 22:36:43 +0000;
  • 499d9eb (origin/RELEASE_2_8, RELEASE_2_8) Creating branch for BioC 2.8 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-04-13 22:32:21 +0000;
  • e2c3c14 Bumped version numbers for BioC 2.8 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-04-13 22:27:35 +0000;
  • be0ac78 CGHcall argument prior set to all by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-04-07 15:29:02 +0000;
  • 1e253af documentation update by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-04-07 11:18:28 +0000;
  • 277f23f Documentation update by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-04-05 15:04:02 +0000;
  • 7c6c97c Documentation update by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-04-04 14:42:28 +0000;
  • 750d4bf added options cellularity and max.losses by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-04-01 16:05:38 +0000;
  • 4cc10fa Added message to user on averaging duplicated clones by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-03-18 14:23:04 +0000;
  • 032312a Added message to user on averaging duplicated clones by Bart P.P. van Houte <bvhoute@few.vu.nl> 2011-03-18 14:20:02 +0000;
  • bb022ea (origin/RELEASE_2_7, RELEASE_2_7) Fixed critical bug on averaging dublicate clones by Bart P.P. van Houte <bvhoute@few.vu.nl> 2010-12-20 17:02:21 +0000;
  • c2c3557 Fixed critical bug on averaging dublicate clones by Bart P.P. van Houte <bvhoute@few.vu.nl> 2010-12-20 17:01:24 +0000;
  • aa63615 minor change by Bart P.P. van Houte <bvhoute@few.vu.nl> 2010-12-20 17:00:50 +0000;
  • 73665bd Fixed bug on averaging dublicate clones by Bart P.P. van Houte <bvhoute@few.vu.nl> 2010-12-20 16:52:55 +0000;
  • dadabd4 removed invalid biocViews terms by Dan Tenenbaum <dtenenba@fhcrc.org> 2010-11-06 21:29:12 +0000;
  • ebc481e Bumped version numbers again for new BioC 2.8 devel cycle. ERRATA: Previous bump was for BioC 2.7 release (of course), not 2.6! by Herve Pages <hpages@fhcrc.org> 2010-10-18 05:57:44 +0000;
  • fe522dc Creating branch for BioC 2.7 release by Herve Pages <hpages@fhcrc.org> 2010-10-18 05:49:17 +0000;
  • 4d7b5bb Bumped version numbers for BioC 2.6 release by Herve Pages <hpages@fhcrc.org> 2010-10-18 05:34:23 +0000;
  • a84d28f Update package description by Bart P.P. van Houte <bvhoute@few.vu.nl> 2010-10-11 12:22:46 +0000;