Bioconductor Code: BiocNeighbors

Graph of BiocNeighbors

636715e (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:06:23 -0400;
92cd30f (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:06:23 -0400;
ba7d8c2 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:02:50 -0400;
4b19ef2 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:02:50 -0400;
8a58137 Testfix for cap on the number of workers in BiocParallel. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2022-11-08 11:21:31 -0800;
3807024 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:18:04 -0400;
3b227be (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:18:04 -0400;
e1ef9c4 Vendored knncolle and its dependencies for downstream use. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2022-05-26 15:57:24 -0700;
227c7fc Shifted vendored Annoy header files into src/. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2022-05-26 15:34:38 -0700;
100a2cb bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:49:53 +0000;
670a1bd (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:49:53 +0000;
244b2d4 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:45:33 +0000;
3c8a290 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:45:33 +0000;
3a3192a bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:36:35 +0000;
c6779d6 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:36:35 +0000;
1919213 Forgot to square root the L2 norm for cosine distances. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2021-05-18 09:12:38 -0700;
cf5c9f8 Updated docs, streamlined with @inheritParams. Bumped version and date, updated NEWS. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2021-05-18 00:28:34 -0700;
8385e1d Added support for cosine distances via L2 normalization. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2021-05-17 22:33:23 -0700;
360d377 Bumped version and date, renamed the workflow file. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-15 21:43:35 -0800;
f50107e Skip Annoy-related tests if RcppAnnoy version disagrees. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-15 21:40:13 -0800;
3f382ff Updated the Annoy library headers. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-16 05:36:37 +0000;
f21a26b Bumped version and date, added NEWS. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-12 11:46:35 -0800;
889bc91 (origin/RELEASE_3_12, RELEASE_3_12) Skipped all the annoy tests. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-06 16:54:29 -0800;
c8856d1 Vendored 0.0.16 for proper reproduction of old results. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-06 16:41:07 -0800;
307355e Fixed the transplanter. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-06 15:35:25 -0800;
5ffdce5 Added all the missing documentation files. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-06 12:23:58 -0800;
e20f6b6 Vendored the Annoy libraries with daily updates. This provides more stability for the release branch. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-06 11:59:24 -0800;
21d8e39 Switch to using the RcppAnnoy.h header. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-05 11:23:47 -0800;
c4916b3 Switch all documentation to use roxygen. (#16) by Aaron Lun <LTLA@users.noreply.github.com> 2020-11-13 22:55:29 -0800;
3d45fd4 Added more convenient getters/setters via double bracket notation. (#15) by Aaron Lun <LTLA@users.noreply.github.com> 2020-11-11 23:21:32 -0800;
baa1a39 Bumped version and date. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-11-11 10:19:47 -0800;
5f7f361 Accomodate RcppAnnoy 0.16.2 or later with Annoy 1.17 (#14) by Dirk Eddelbuettel <edd@debian.org> 2020-11-11 12:18:11 -0600;
af6c3c2 Bumped version and date. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-11-11 10:18:53 -0800;
103d9a9 Accomodate RcppAnnoy 0.16.2 or later with Annoy 1.17 (#14) by Dirk Eddelbuettel <edd@debian.org> 2020-11-11 12:18:11 -0600;
362bc21 Migrated findMutualNN from batchelor. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-11-10 23:10:45 -0800;
e43d73b Gave up getting the docker publication to work. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-11-10 22:43:08 -0800;
6ff5156 Switch back to an older publication scheme. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-11-10 21:49:19 -0800;
3f3401d Added actions for R CMD check, docker publication. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-11-10 21:18:33 -0800;
8a2af00 Added Dockerfile to power GHA's. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-11-10 20:58:20 -0800;
def81d6 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:36:40 -0400;
e4e7067 bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:36:39 -0400;
1dcfaf3 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:17:53 +0000;
fed16be (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:17:53 +0000;
2c64c5d Bumped version and date. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-04-26 14:03:37 -0700;
04bf4e1 Propagated mentions of exhaustive search throughout docs. Cleaned up some of Allison's exhaustive docs, tests. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-04-26 10:08:08 -0700;
9d21cd1 Mopped up redundant queryNeighbors function definitions. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-04-26 09:47:12 -0700;
7486c06 Add exhaustive search mode for KNN and ranged search. by Allison Vuong <47435771+allisonvuong@users.noreply.github.com> 2020-04-26 09:46:05 -0700;
0c18579 Give up (again!) with Annoy tests on 32-bit Windows. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-04-19 23:10:36 -0700;
8d12d4a Compare directly to Annoy's native distance calculation. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-04-17 22:02:06 -0700;
ca0b6f4 Bumped version and date. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-04-13 10:45:17 -0700;
df76dd4 Give up on testing Annoy-related code on Windows. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-04-13 10:44:56 -0700;
84d6733 Fixed C++ warning, use reserved vectors instead of deques. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-04-13 09:16:58 -0700;
2e0c2a7 Bumped version and date. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-03-09 23:15:26 -0700;
b4c380a Revert "Quick hack to sidestep RcppAnnoy header problem." by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-03-09 23:10:05 -0700;
1fcb470 (origin/RELEASE_3_10, RELEASE_3_10) Bumped version and date. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-02-28 21:44:32 -0800;
04f881a Quick hack to sidestep RcppAnnoy header problem. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-02-28 21:32:20 -0800;
6374949 Bumped version and date. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-02-28 21:34:29 -0800;
d778c3c Quick hack to sidestep RcppAnnoy header problem. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-02-28 21:32:20 -0800;
47b839f Bumped version and date. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-10-30 23:28:37 -0700;
56b4eae Merge branch 'postrelease' by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-10-30 23:28:19 -0700;
8073996 Bumped version and date. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-10-30 23:27:46 -0700;
1f1be09 Fix to eliminate false positives for tie detection. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-10-30 23:27:09 -0700;
a0829b0 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:43:16 -0400;
35b9365 bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:11:15 -0400;
442c1b7 Bumped version, date; updated NEWS. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-15 10:41:33 -0700;
d278d37 Added tests, updated docs for count-only range finding option. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-15 10:40:05 -0700;
fea4fdb Allow memory-efficient counting of ranged neighbors. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-15 10:00:26 -0700;
b1a61b8 Bumped version, date; updated NEWS. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-14 13:17:05 -0700;
8b06d91 Avoid redundancy in S4 generic signature and docs. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-14 13:03:34 -0700;
8f2f652 Recompiled Rcpp attributes. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-14 12:45:24 -0700;
9b62679 Documented and tested new tie-skipping behavior. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-14 12:29:06 -0700;
be3182f Allow users to turn off tie warnings in exact NN searches. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-14 12:26:22 -0700;
5733706 Stripped out unnecessary *_dist_to_k C++ functions. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-14 11:05:11 -0700;
5491d8b Reorganized R template code, removed unnecesary files. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-14 10:59:15 -0700;
be25e66 Testfixes. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-14 10:58:09 -0700;
2d7bf9e Bugfix for generic. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-14 10:56:58 -0700;
ed6baf5 Updated tests to check for last distance/index. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-14 10:49:52 -0700;
82eba50 Updated docs. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-14 00:35:31 -0700;
03ab0f3 Overhauled R functions/methods to use 'last' concept. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-14 00:28:05 -0700;
65236d7 Pull out trailing statistics in C++ code for KNN search. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-09-13 23:54:26 -0700;
be43721 Merge pull request <a href="#6">#6</a> from LTLA/rcppize by Aaron Lun <LTLA@users.noreply.github.com> 2019-07-19 09:16:12 -0700;
9b9fda3 Bumped version number, date; updated NEWS. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-19 09:15:26 -0700;
61ccf9f Test for no warnings when only looking for distances. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-19 08:57:05 -0700;
d519f3d Bugfixes for query-related code. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-19 08:56:45 -0700;
013ce8e Turn off warnings when querying for exact last distance. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 23:21:48 -0700;
ee622ef Added tests for last-distance functionality. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 23:21:16 -0700;
c20c4b1 Bugfixes to exact query R code. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 23:16:27 -0700;
d3e456e Bugfix for distance normalization. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 22:49:08 -0700;
53c8ad0 Updated documentation for new last-distance-only mode. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 22:34:11 -0700;
95193cf Various bugfixes to C++ code. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 22:33:54 -0700;
ecaecf7 Incorporate last-distance-only mode into R templates, functions. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 22:33:01 -0700;
6f293aa Added actual methods to find the distance to k'th neighbor. Added same methods for querying the distance. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 21:41:51 -0700;
4a173bb Consolidated some C++ code to reduce number of files. This was done per-algorithm to avoid mixing DEFINEs. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 20:04:27 -0700;
c8bada2 Bugfix for buildVptree. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 19:58:13 -0700;
39a8bf8 Repeated reorganization for *Neighbors functions. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 19:39:31 -0700;
7a448f1 Fixed argument passing to C++ for queryKNN. Consolidated definitions into a single file. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 17:54:28 -0700;
a3a48e5 Fixed namespace, RcppExports. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 17:51:17 -0700;
8e4537e Fixed argument passing to C++ for findKNN. Consolidated definitions into a single file. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 17:46:27 -0700;
0e5e9e9 Switch to using RcppExport'd functions. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 17:30:09 -0700;
8679b4d Updated handling of BiocParallelized queries. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-18 17:24:26 -0700;