# BiocHail
This is a multi-step overview of Hail for genetic association
studies
## Tutorial overview
The basic layout, following the [Hail GWAS tutorial](https://hail.is/docs/0.2/tutorials/01-genome-wide-association-study.html):

We'll see how to use a very small excerpt from the
1000 genomes study to produce

Along the way, we illustrate and adjust for population stratification:

## Larger data problem -- 1000 genomes data with T2T reference
We have arranged a serialization of genotypes on chromosome 17
for 3202 1000 genomes samples.
## Relevant LD resources ... in which cloud?
Still to come.
## Simulating multipopulation genotype surveys
Still to come.
## Binding phenotypes from FHIR to Hail
Still to come.