Package: BiSeq
Type: Package
Title: Processing and analyzing bisulfite sequencing data
Version: 1.38.0
Date: 2022-01-14
Author: Katja Hebestreit, Hans-Ulrich Klein
Maintainer: Katja Hebestreit <>
Depends: R (>= 2.15.2), methods, S4Vectors, IRanges (>= 1.17.24),
	GenomicRanges, SummarizedExperiment (>= 0.2.0), Formula
Imports: methods, BiocGenerics, Biobase, S4Vectors, IRanges, GenomeInfoDb,
        GenomicRanges, SummarizedExperiment, rtracklayer, parallel, betareg,
        lokern, Formula, globaltest
Description: The BiSeq package provides useful classes and functions to
        handle and analyze targeted bisulfite sequencing (BS) data such
        as reduced-representation bisulfite sequencing (RRBS) data. In
        particular, it implements an algorithm to detect differentially
        methylated regions (DMRs). The package takes already aligned BS
        data from one or multiple samples.
License: LGPL-3
biocViews: Genetics, Sequencing, MethylSeq, DNAMethylation