inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PATH.Rd
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 \name{@ANNOBJPREFIX@PATH}
 \alias{@ANNOBJPREFIX@PATH}
 \title{Mappings between probe identifiers and KEGG pathway identifiers}
 \description{
   KEGG (Kyoto Encyclopedia of Genes and Genomes) maintains pathway data
   for various organisms. @ANNOBJPREFIX@PATH maps probe identifiers to the
   identifiers used by KEGG for pathways in which the genes represented
   by the probe identifiers are involved
 }
 \details{
   Each KEGG pathway has a name and identifier. Pathway name for a given pathway
   identifier can be obtained using the KEGG data package that can either be
   built using AnnBuilder or downloaded from Bioconductor
   \url{http://www.bioconductor.org}.
 
   Graphic presentations of pathways are searchable at
   url http://www.genome.ad.jp/kegg/pathway.html by using pathway identifiers as
   keys.   
 
   Mappings were based on data provided by: @PATHSOURCE@
 
 }
 \references{
   \url{http://www.genome.ad.jp/kegg/}
 }
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 \seealso{
   \itemize{
     \item \code{\link[AnnotationDbi]{AnnotationDb-class}} for use of
           the \code{select()} interface.
   }
 }
 
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 \examples{
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 ## select() interface:
 ## Objects in this package can be accessed using the select() interface
 ## from the AnnotationDbi package. See ?select for details.
 
 ## Bimap interface:
 x <- @ANNOBJPREFIX@PATH
 # Get the probe identifiers that are mapped to a KEGG pathway ID
 mapped_probes <- mappedkeys(x)
 # Convert to a list
 xx <- as.list(x[mapped_probes])
 if(length(xx) > 0) {
   # Get the PATH for the first five probes
   xx[1:5]
   # Get the first one
   xx[[1]]
 }
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 }
 \keyword{datasets}