INSTALLATION INSTRUCTIONS: The installation has only been tested on Ubuntu so far, if you need to install on Windows or Mac additional steps might be necessary (e.g. installation of Rtools from https://cran.r-project.org/bin/windows/Rtools/) 1) Install a recent version of R (3.2.3) from https://www.r-project.org/ 2) Optional: For ease of use, install Rstudio from https://www.rstudio.com/ 3) Open R and install all dependencies. Please ensure that you have writing permissions to install packages. Execute the following lines one by one: install.packages("devtools") source("http://bioconductor.org/biocLite.R") biocLite("GenomicRanges") biocLite("GenomicAlignments") library(devtools) install_github("ataudt/aneufinderData") install_github("ataudt/aneufinder") # Or alternatively if the above line doesn't work: install_git("git://github.com/ataudt/aneufinderData.git", branch = "master") install_git("git://github.com/ataudt/aneufinder.git", branch = "master")