1. AnVIL
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Graph of AnVIL
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  • 54b3afe (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:22:31 -0400;
  • a9b2ab1 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:22:31 -0400;
  • ef11648 version bump 1.13.11 by LiNk-NY <marcel.ramos@roswellpark.org> 2023-10-19 17:04:50 -0400;
  • 728e0df add parameter workflowId to avworkflow_files() and avworkflow_localize() (#90) by yubocheng <Yubo.Cheng@RoswellPark.org> 2023-10-19 16:56:51 -0400;
  • 118afbe version bump 1.13.10 by LiNk-NY <marcel.ramos@roswellpark.org> 2023-09-07 17:49:44 -0400;
  • 2cb3948 remove trimws for workspace names with leading space, closes <a href="#86">#86</a> (#87) by Marcel Ramos <LiNk-NY@users.noreply.github.com> 2023-09-07 17:48:58 -0400;
  • 2ca65d9 version bump 1.13.9 by LiNk-NY <marcel.ramos@roswellpark.org> 2023-09-05 17:52:10 -0400;
  • 10f4aa3 bug fix: location_is_uri replaces source_is_uri (#88) by Marcel Ramos <LiNk-NY@users.noreply.github.com> 2023-09-05 17:51:27 -0400;
  • b95f37e update NEWS formatting by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-08-28 13:13:07 -0400;
  • 8ff4d4c clarify avworkflows_configuration_* operations by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-08-24 11:30:31 -0400;
  • 1a16b55 update NEWS.md by LiNk-NY <marcel.ramos@roswellpark.org> 2023-08-22 13:52:42 -0400;
  • 9d26b88 version bump 1.13.7 by LiNk-NY <marcel.ramos@roswellpark.org> 2023-08-22 13:49:35 -0400;
  • 820ef90 enable .gsutil_is_uri checks for destination inputs in gsutil cp (#83) by Marcel Ramos <LiNk-NY@users.noreply.github.com> 2023-08-22 13:48:49 -0400;
  • a51d008 add 'op' to avstop_for_status() in .avworkflow_response() by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-08-16 14:44:09 -0400;
  • 648ec2d (origin/RELEASE_3_17, RELEASE_3_17) add 'op' to avstop_for_status() in .avworkflow_response() by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-08-16 14:44:09 -0400;
  • e7f43e6 change maintainer to Marcel Ramos by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-06-30 11:47:00 -0400;
  • 3a3a575 report avtable_import_status() messages by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-06-30 10:54:20 -0400;
  • 1f7ced2 version bump by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-26 13:54:13 -0400;
  • 8e73968 provide some guidance when avtable() fails (due to server timeout?) by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-26 13:52:31 -0400;
  • 02aff8c version bump by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-26 13:53:18 -0400;
  • 23ca74f provide some guidance when avtable() fails (due to server timeout?) by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-26 13:52:31 -0400;
  • 5d08d82 version bump and NEWS by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-26 11:20:05 -0400;
  • 3ff8c8e only show progress bar in interactive() sessions by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-26 11:16:08 -0400;
  • 555cbe4 version bump and NEWS entry by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-26 11:18:47 -0400;
  • 2524662 only show progress bar in interactive() sessions by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-26 11:16:08 -0400;
  • 0e6934e update .gitignore to ignore only R files in the package root by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-26 10:31:25 -0400;
  • 9e26456 update .gitignore to ignore only R files in the package root by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-26 10:31:25 -0400;
  • 4630b70 version bump and NEWS update by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-09 04:46:22 -0400;
  • f84e444 Merge branch 'issue-76' into devel by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-09 04:45:26 -0400;
  • 0e28aa1 version bump and NEWS by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-09 04:44:58 -0400;
  • 90516dd Merge branch 'issue-76' into RELEASE_3_17 by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-09 04:42:42 -0400;
  • 2026ecb update documentation for avtable_import*() by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-09 04:39:07 -0400;
  • ce1f23e support paged upload for avtable_import_set() by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-07 11:30:32 -0400;
  • 7a7ce73 separate avtable_import() and avtable_import_status() by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-05-04 05:16:09 -0400;
  • 3e921e8 explore paged avtable_import() by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-04-24 17:36:40 -0400;
  • 4cfdca6 explore async = TRUE for avtable_import() by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-04-21 12:49:50 -0400;
  • f130712 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:18:22 -0400;
  • 6964a1c bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:18:22 -0400;
  • ab20770 typo introduced in last commit by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-04-20 16:16:14 -0400;
  • 1492081 unit tests and version bump by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-04-11 18:22:54 -0400;
  • 188cd18 version bump and NEWS update by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-04-07 13:51:34 -0400;
  • 70ed572 add `na = ` to avtable(), avtable_import() by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-04-07 13:50:15 -0400;
  • 5eca0fb Merge branch 'id_cols' into devel by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-03-23 16:10:11 -0400;
  • 1390c43 clean up warnings by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-03-23 13:45:04 -0400;
  • 38838f0 (origin/RELEASE_3_16, RELEASE_3_16) version bump s Please enter the commit message for your changes. Lines starting by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-03-23 13:59:35 -0400;
  • ab79a1a clean up warnings by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-03-23 13:45:04 -0400;
  • 7e72de3 explicit use of id_cols argument, refers to <a href="#73">#73</a> by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-03-23 11:27:11 -0400;
  • 847aa20 version bump by Martin Morgan <Martin.Morgan@RoswellPark.org> 2023-03-23 12:58:55 -0400;
  • f0c9a4f explicit use of id_cols argument, refers to <a href="#73">#73</a> by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-03-23 11:27:11 -0400;
  • 3c2999b remove Gen3 from vignettes and Description: by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-12-06 10:45:37 -0500;
  • 3db4925 deprecate Gen3 services by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-12-06 10:43:52 -0500;
  • bf84977 version bump and NEWS entry by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-11-03 10:43:07 -0400;
  • 929ca56 make bucket= argument deprecation / conssequences more explicit by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-28 13:22:30 -0400;
  • d0c4eb8 use API to discover workflow log / output files, if available by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-27 11:37:37 -0400;
  • 86a2c1a use 'submissionRoot' to access workflow files by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-21 16:22:22 -0400;
  • caa5554 ensure workspace `name` is URLencode()ed by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-20 18:53:25 -0400;
  • 7d3aa4d Merge branch 'issue-69' by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-11-03 10:38:30 -0400;
  • 1a5c589 version bump and NEWS entry by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-11-03 10:37:53 -0400;
  • 25f8915 make bucket= argument deprecation / conssequences more explicit by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-28 13:22:30 -0400;
  • 1ac4745 use API to discover workflow log / output files, if available by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-27 11:37:37 -0400;
  • 7d8cfda use 'submissionRoot' to access workflow files by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-21 16:22:22 -0400;
  • fb952c8 version bump and NEWS entry by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-11-03 10:34:50 -0400;
  • 888760a ensure workspace `name` is URLencode()ed by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-20 18:53:25 -0400;
  • 50883e0 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:22:07 -0400;
  • 69ac8d4 bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:22:07 -0400;
  • e48ba6e update unit tests and Dockstore version by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-17 12:53:24 -0400;
  • a38d44a version bump by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-11 19:38:37 -0400;
  • 2559655 change API accept() to '*/*' by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-11 15:48:49 -0400;
  • a08a6ac (origin/RELEASE_3_15, RELEASE_3_15) version bump by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-11 19:37:36 -0400;
  • d9c021f change API accept() to '*/*' by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-11 15:48:49 -0400;
  • f8f8856 version bump and NEWS update by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-06 18:01:05 -0400;
  • 476e977 allow 'NULL' for entity arguments of avworkflow_run() by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-05 16:14:09 -0400;
  • 4efdba0 version bump and NEWS update by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-06 17:57:21 -0400;
  • 5489b77 update Dockstore api reference md5 sums by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-06 17:53:47 -0400;
  • 11962a3 avoid chaning status of 'Done' workflows to 'Aborted' by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-05 16:17:17 -0400;
  • fac7057 allow 'NULL' for entity arguments of avworkflow_run() by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-05 16:14:09 -0400;
  • b4b09ff avoid chaning status of 'Done' workflows to 'Aborted' by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-05 16:17:17 -0400;
  • 1176056 version bump and NEWS entry by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-05 14:37:03 -0400;
  • fc2d308 add gcloud_account() to access token cache key by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-05 14:28:38 -0400;
  • f46db69 version bump and NEWS entry by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-05 14:34:09 -0400;
  • 162b8e0 add gcloud_account() to access token cache key by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-10-05 14:28:38 -0400;
  • 1f0b260 Merge branch 'gadgets' by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-09-26 15:15:09 -0400;
  • dc9b120 version bump, update NEWS, brief mention in vignette by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-09-26 14:48:24 -0400;
  • 325a6cb rename gadgets to avoid name conflicts by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-09-26 14:42:14 -0400;
  • 9318b60 refactor gadgets for code re-use by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-05-28 11:29:24 -0400;
  • eae6cb3 introduce gadgets to facilitate navigation in RStudio by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-05-26 13:57:07 -0400;
  • 30101d4 update unit test to new API by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-09-21 14:25:19 -0400;
  • ad8766c typos and minor changes by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-09-21 13:52:08 -0400;
  • febe6ad update API snapshots to current version by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-09-21 13:51:47 -0400;
  • a28a69b update Leonardo, Rawls, and Terra APIs by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-09-21 13:42:18 -0400;
  • 3c16f46 add infrastructure and initail snapshot for tracking API changes by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-09-21 13:34:15 -0400;
  • bd6d1e7 add cloudml::gcloud_install() as a possible way to install gcloud by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-09-06 11:56:06 -0400;
  • 41ad580 version bump and NEWS file by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-08-15 14:48:00 -0400;
  • 1c11280 normalize gsutil_* source and destination paths by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-08-15 14:42:03 -0400;
  • 5c3ebd8 version bump and NEWS update by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-08-15 14:53:28 -0400;
  • 393cb86 normalize gsutil_* source and destination paths by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-08-15 14:42:03 -0400;
  • 55a9f65 update Dockstore md5sums by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-08-15 14:48:37 -0400;
  • 57ea010 update Dockstore md5sums by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-08-15 14:48:37 -0400;
  • 2574563 minor clean-up by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-08-15 14:39:21 -0400;
  • 27c3cf6 update instructions for use in the AnVIL cloud by Martin Morgan <Martin.Morgan@RoswellPark.org> 2022-08-15 12:15:25 -0400;