Name Mode Size
..
AUCell_assignCells.Rd 100644 3 kb
AUCell_buildRankings.Rd 100755 5 kb
AUCell_calcAUC.Rd 100755 5 kb
AUCell_createViewerApp.Rd 100755 2 kb
AUCell_exploreThresholds.Rd 100755 6 kb
AUCell_plotHist.Rd 100755 2 kb
AUCell_plotTSNE.Rd 100755 3 kb
AUCell_run.Rd 100644 5 kb
GeneSet-methods.Rd 100755 2 kb
aucellResults-class.Rd 100755 3 kb
getSetNames.Rd 100644 1 kb
orderAUC.Rd 100644 0 kb
plotEmb_rgb.Rd 100644 1 kb
plotGeneCount.Rd 100755 1 kb
plotTsne_cellProps.Rd 100644 2 kb
updateAucellResults.Rd 100755 1 kb
README.md
# AUCell AUCell is an R-package to analyze the state of gene-sets in single-cell RNA-seq data (i.e. identify cells with active gene signatures). *Availability*: - The newest stable version of AUCell is available in *[Bioconductor](https://bioconductor.org/packages/AUCell)*. The package also contains a **tutorial** [(vignette)](https://bioconductor.org/packages/release/bioc/vignettes/AUCell/inst/doc/AUCell.html) with information on how to run AUCell and how to interprete its results. - This Github repository is meant mostly for development. "Use at your own risk" :-). Developers are welcome to contribute.