Name Mode Size
..
01_buildRankings.R 100755 9 kb
02_calcAUC.R 100755 11 kb
03_exploreThresholds.R 100755 7 kb
aux_AUCell_assignCells.R 100644 4 kb
aux_AUCell_plotHist.R 100755 3 kb
aux_AUCell_plotTSNE.R 100755 10 kb
aux_AUCell_run_byBlocks.R 100644 6 kb
aux_binarizeAUC.R 100644 1 kb
aux_createViewerApp.R 100755 11 kb
aux_getSetNames.R 100644 1 kb
aux_methods.R 100755 2 kb
aux_orderAUC.R 100644 1 kb
aux_plotEmb_rgb.R 100644 4 kb
aux_plotGeneCount.R 100755 3 kb
aux_thresholds.R 100755 1 kb
aux_updateAucellResults.R 100755 2 kb
class_aucellResults.R 100755 8 kb
priv_auc.assignmnetThreshold_v6.R 100755 12 kb
priv_plots.R 100755 6 kb
README.md
# AUCell AUCell is an R-package to analyze the state of gene-sets in single-cell RNA-seq data (i.e. identify cells with active gene signatures). *Availability*: - The newest stable version of AUCell is available in *[Bioconductor](https://bioconductor.org/packages/AUCell)*. The package also contains a **tutorial** [(vignette)](https://bioconductor.org/packages/release/bioc/vignettes/AUCell/inst/doc/AUCell.html) with information on how to run AUCell and how to interprete its results. - This Github repository is meant mostly for development. "Use at your own risk" :-). Developers are welcome to contribute.