1. ASpli
  2. Graph
Graph of ASpli
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  • 7525b85 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:51:51 -0400;
  • bf94d05 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:51:51 -0400;
  • 55bb562 solve merging conflicts with bioc repo by achernom <algo107@gmail.com> 2023-09-05 18:01:52 -0300;
  • 846aeb1 initial commit by achernom <algo107@gmail.com> 2023-09-05 17:52:14 -0300;
  • 2405b10 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:48:38 -0400;
  • 2686a85 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:48:38 -0400;
  • 22dbaf4 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:14:10 -0400;
  • ff40685 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:14:10 -0400;
  • a8319d7 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:34:17 +0000;
  • 4e2d897 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:34:17 +0000;
  • 14aea67 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:29:18 +0000;
  • 9dad6f1 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:29:18 +0000;
  • afabc60 Merge branch 'main' by andresrabinovich <andresrabinovich@gmail.com> 2021-05-25 22:35:34 -0300;
  • 3859148 Cambia la version a la 2.3.1 en NEWS by andresrabinovich <andresrabinovich@gmail.com> 2021-05-25 22:35:21 -0300;
  • 4b28b23 Cambia la version a la 2.3.1 que deberia ser la correcta. En devel esta en 2.3.0 by andresrabinovich <andresrabinovich@gmail.com> 2021-05-25 22:34:39 -0300;
  • fdad80e Adds BUG FIXES in news and changes to DESCRIPTION reflecting current version by andresrabinovich <andresrabinovich@gmail.com> 2021-05-25 22:33:30 -0300;
  • 0345aaa Agrega la correccion del bug a NEWS y aumenta el numero de version en DESCRIPTION, a 2.2.1 by andresrabinovich <andresrabinovich@gmail.com> 2021-05-25 22:30:16 -0300;
  • 1478e4c Merge branch 'master' of git.bioconductor.org:packages/ASpli by andresrabinovich <andresrabinovich@gmail.com> 2021-05-25 22:23:46 -0300;
  • 8c8fe8e Resuelve el issue 10 modificando la funcion vecMin. Ahora es solamente un wrapper de la funcion pmin que hace lo mismo y es parte del paquete base de R by andresrabinovich <andresrabinovich@gmail.com> 2021-05-25 22:22:37 -0300;
  • e5aa320 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:22:07 +0000;
  • 6dddfb0 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:22:07 +0000;
  • 290d36c Merge branch 'main' of https://github.com/chernolab/ASpli-labo into main by andresrabinovich <andresrabinovich@gmail.com> 2021-05-13 12:25:07 -0300;
  • 4f07924 Intenta corregir la CITATION que pone nombre y primera letra del apellido by andresrabinovich <andresrabinovich@gmail.com> 2021-05-13 12:24:31 -0300;
  • 6b20656 change author order by estepi <soyestepi@gmail.com> 2021-05-13 17:24:10 +0200;
  • 7843b7a Agrega detalles de cambios en NEWS by andresrabinovich <andresrabinovich@gmail.com> 2021-05-13 12:13:12 -0300;
  • ea5844d change version and date by estepi <soyestepi@gmail.com> 2021-05-12 13:52:39 +0200;
  • a98502f agrego pbmcapply al NAMESPACE by estepi <soyestepi@gmail.com> 2021-05-12 13:51:17 +0200;
  • c7d879d Resuelve el issue #8, DESCRIPTION incluia erroneamente graphic en lugar de graphics by andresrabinovich <andresrabinovich@gmail.com> 2021-05-11 13:14:42 -0300;
  • 062e5df Resuelve el issue #7, agrega progress bar a binGenome by andresrabinovich <andresrabinovich@gmail.com> 2021-05-11 12:34:54 -0300;
  • d5faa8f Changes CITATION destination and fixes some problems with man by andy <cursos@a2b2c.org> 2021-05-10 21:52:12 -0300;
  • cdfdce1 changes in description and news by estepi <soyestepi@gmail.com> 2021-05-10 19:02:23 +0200;
  • 5ab3feb add citation by estepi <soyestepi@gmail.com> 2021-05-10 18:41:33 +0200;
  • e92b4bf Adds an NA check for junctions when sumarizing reads. Removes NA junctions with a warning, solving issue <a href="#5">#5</a> by Andrés Rabinovich <andresrabinovich@gmail.com> 2021-04-23 17:59:35 -0300;
  • 844c8f9 Resuelve issue <a href="#3">#3</a> comentando el codigo de busqueda del string "NA" en nombres de junturas. Pueden aparecer cromosomas con, por ejemplo, nombres tipo rDNA con lo cual no era un buen metodo para encontrar junturas NA. Ademas, el comportamiento que tenia era de debuguing y solo servia para colgar la ejecucion by Andrés Rabinovich <andresrabinovich@gmail.com> 2021-04-16 17:46:11 -0300;
  • bebaed4 Merge branch 'main' of https://github.com/chernolab/ASpli-labo into main by Ariel Chernomoretz <ariel@df.uba.ar> 2021-03-10 14:25:22 -0300;
  • dd99c96 update Readme.md by Ariel Chernomoretz <ariel@df.uba.ar> 2021-03-10 14:06:39 -0300;
  • d3c58c3 udate Readme.md with workin quick start example. by Ariel Chernomoretz <ariel@df.uba.ar> 2021-03-10 14:01:09 -0300;
  • 39a5d3f Fixes versioning number from 2.1 to 2.1.1 in order to merge with bioconductor devel by andresrabinovich <andresrabinovich@gmail.com> 2021-03-05 11:44:55 -0300;
  • 7a0fc4a Changes version to 2.1 and updates NEWS by andresrabinovich <andresrabinovich@gmail.com> 2021-03-05 11:40:41 -0300;
  • 8eaad65 aver ahora...add new section (ASpli overview) in vignette by Ariel Chernomoretz <ariel@df.uba.ar> 2021-03-04 17:34:38 -0300;
  • 6a66cfb Add a new section (ASpli overview) in vignette by Ariel Chernomoretz <ariel@df.uba.ar> 2021-03-04 17:33:47 -0300;
  • d045b7d set: eval=TRUE for quick start and FALSe for every other code chunk in the vignette by Ariel Chernomoretz <ariel@df.uba.ar> 2021-03-04 16:15:10 -0300;
  • f4f648f ASpli.R and Aspli.Rnw in inst/doc and ASpli.pdf by Ariel Chernomoretz <ariel@df.uba.ar> 2021-03-04 16:00:59 -0300;
  • 73041a3 Quick start section was modify in order to use gtf and bam files provided by Aspli package by Ariel Chernomoretz <ariel@df.uba.ar> 2021-03-04 15:57:26 -0300;
  • 71952cf Las junturas con NA son removidas pero no pudimos identificar por que aparecen los NA by Andres <arabinov@bnf-server-3.fleloir.local> 2020-12-11 18:33:17 +0000;
  • c3a5040 Arregla conflictos entre i12 y master para poder mergear by Andres <arabinov@bnf-server-3.fleloir.local> 2020-12-01 15:04:25 +0000;
  • d204765 Changes locus overlap from exon overlaps to gene range overlap by Andres <arabinov@bnf-server-3.fleloir.local> 2020-12-01 14:57:16 +0000;
  • 4c25c3f Agregue funcion para plotear un locus (coverage y arquitectura del gen con junturas que aparezcan por ahi). No es necesario que el gen haya pasado el filtro de integratedSignals. by achernom <algo107@gmail.com> 2020-11-24 00:43:42 -0300;
  • 0ee4a9e Fixes issue <a href="#6">#6</a> binGenome function may assign incorrect bins at the start and the end of each gene by Andres <arabinov@bnf-server-3.fleloir.local> 2020-11-21 13:48:00 +0000;
  • 931d0a6 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:16:38 -0400;
  • 641dc04 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:16:38 -0400;
  • c1ee573 Adds paired end to new features by Andres <arabinov@bnf-server-3.fleloir.local> 2020-09-17 21:57:22 +0000;
  • 451e97f last changes in i/5 by estepi <soyestepi@gmail.com> 2020-09-14 15:18:08 +0200;
  • dd9627d fix bugs en man pages by estepi <soyestepi@gmail.com> 2020-08-24 19:39:19 +0200;
  • a8e7b02 fix bug on splicingReport by estepi <soyestepi@gmail.com> 2020-08-24 18:53:57 +0200;
  • 909836e change by default libType="SE" by estepi <soyestepi@gmail.com> 2020-08-24 18:23:43 +0200;
  • f7c1476 remove lines 274 y 275 de ASpli_methods.R by estepi <soyestepi@gmail.com> 2020-08-24 17:19:07 +0200;
  • 4f0a343 Add new parameter to function: libType y strandMode by estepi <soyestepi@gmail.com> 2020-08-24 14:53:44 +0200;
  • 8e6029e edit the vignette by estepi <soyestepi@gmail.com> 2020-08-24 08:38:10 +0200;
  • c9593e4 Adds bams on the fly for jCounts by Andres <arabinov@bnf-server-3.fleloir.local> 2020-07-24 01:41:06 +0000;
  • 6c0ae2f Fixes error in call by Andres <arabinov@bnf-server-3.fleloir.local> 2020-07-23 23:44:32 +0000;
  • 0fdf8cf Changes system2 call for system by Andres <arabinov@bnf-server-3.fleloir.local> 2020-07-23 23:35:38 +0000;
  • 25f9460 Changes system2 for system call by Andres <arabinov@bnf-server-3.fleloir.local> 2020-07-23 23:13:34 +0000;
  • 9a7896b Changes target data frame to accomodate only one extra column with full call to aligner. Calls aligner in readCounts, builds bai, reads it and drops bam and bai if required by andres <andresrabinovich@gmail.com> 2020-07-22 20:25:58 -0300;
  • 5fbffc5 Checks bam existence before running gbCount by andres <andresrabinovich@gmail.com> 2020-07-21 19:16:36 -0300;
  • e4c3052 Adds alignFastq and dropBAM to gbCounts by andres <andresrabinovich@gmail.com> 2020-07-21 19:10:36 -0300;
  • dda9b82 news and desc by estepi <soyestepi@gmail.com> 2020-07-21 16:22:53 +0200;
  • 45ad555 add new functions to NEWS by estepi <soyestepi@gmail.com> 2020-07-21 12:50:31 +0200;
  • 7bae45e Update Readme.md by Chernomoretz Lab <6231853-ChernoLab@users.noreply.gitlab.com> 2020-07-20 16:27:02 +0000;
  • d834bf4 Arregle un tema de < y > by Ariel Chernomoretz <ariel@df.uba.ar> 2020-07-20 13:25:48 -0300;
  • 52821e3 estaba mal la comparacion de fecha... by Ariel Chernomoretz <ariel@df.uba.ar> 2020-07-20 13:14:32 -0300;
  • 4f727fd Fixes merge conflict by andres <andresrabinovich@gmail.com> 2020-07-20 13:01:34 -0300;
  • e732f10 vignette: conditional (on date) use of devel branch for intallation via BiocManager by Ariel Chernomoretz <ariel@df.uba.ar> 2020-07-20 12:59:14 -0300;
  • 9b5756f Adds devel version in vignette by andres <andresrabinovich@gmail.com> 2020-07-20 12:58:38 -0300;
  • 7bc590a Adds devel version in vignette by andres <andresrabinovich@gmail.com> 2020-07-20 12:58:03 -0300;
  • c3ce3c9 Fixes Readme and version in DESCRIPTION by andres <andresrabinovich@gmail.com> 2020-07-20 11:18:06 -0300;
  • 097d54b Fixes an example that required samtools by andres <andresrabinovich@gmail.com> 2020-07-19 21:01:22 -0300;
  • 1657767 Removes examples from man pages for deprecated functions by andres <andresrabinovich@gmail.com> 2020-07-17 18:59:53 -0300;
  • 80d3857 Readds to man deprecated functions by andres <andresrabinovich@gmail.com> 2020-07-17 15:58:44 -0300;
  • 408c35c Solving conflicts with fork by andres <andresrabinovich@gmail.com> 2020-07-17 13:01:07 -0300;
  • 7c43b5b Adds full description to Readme.md by andres <andresrabinovich@gmail.com> 2020-07-16 18:41:33 -0300;
  • 5c4dc7a change ASpli2 por ASpli by estepi <soyestepi@gmail.com> 2020-07-16 17:40:29 +0200;
  • f13b5fa format NEWS by estepi <soyestepi@gmail.com> 2020-07-16 08:02:37 +0200;
  • 373a7ae new changes for man pages by estepi <soyestepi@gmail.com> 2020-07-14 12:33:39 +0200;
  • 218f7af add man for deprecated functions by estepi <soyestepi@gmail.com> 2020-07-14 09:37:42 +0200;
  • be2c580 Deprecates all v1 functions but are still callable. All ASpli objects have an .ASpliVersion slot with the version number (ie: 1 or 2). V2 functions check for v2 ASpli objects by andres <andresrabinovich@gmail.com> 2020-07-13 20:10:52 -0300;
  • 37b7adb jCounts backwards compatibility by andres <andresrabinovich@gmail.com> 2020-07-13 18:21:14 -0300;
  • 9e9793f loadBams shows deprecated only when cores = NULL by andres <andresrabinovich@gmail.com> 2020-07-13 16:43:49 -0300;
  • 7144d35 readCounts is still usable by ASpli v1 but deprecated by andres <andresrabinovich@gmail.com> 2020-07-13 15:57:34 -0300;
  • c3049b6 Intermediate commit checking readCounts by andres <andresrabinovich@gmail.com> 2020-07-13 14:59:08 -0300;
  • 0aeb3ed Adds ASpliVersion to ASpliCounts object by andres <andresrabinovich@gmail.com> 2020-07-13 14:40:20 -0300;
  • cfb9f3b add DUreport to methods by estepi <soyestepi@gmail.com> 2020-07-11 14:13:36 +0200;
  • 39c75ed Merge branch 'master' of https://gitlab.com/ChernoLab/aspli2-labo by estepi <soyestepi@gmail.com> 2020-07-11 14:12:48 +0200;
  • f4984b3 add DUreport to methods by estepi <soyestepi@gmail.com> 2020-07-11 14:11:00 +0200;
  • 2ae3134 change installation mode by Estefania <soyestepi@gmail.com> 2020-06-24 09:44:52 +0000;
  • 00d5fed Merge branch 'i/51' by andres <andresrabinovich@gmail.com> 2020-06-23 17:41:51 -0300;
  • a96defb Agrega algunos cambios para que pase los checks by andres <andresrabinovich@gmail.com> 2020-06-23 17:40:54 -0300;
  • 40be501 Resuelve varios problemas con el check y check --as-cran. Los ejemplos tardan más de 5segundos en correr y eso devuelve una NOTE con --as-cran by andres <andresrabinovich@gmail.com> 2020-06-21 16:39:00 -0300;
  • 6740fb0 see vignette changes by estepi <soyestepi@gmail.com> 2020-06-19 17:09:01 +0200;
  • 6cf7fda option for description by estepi <soyestepi@gmail.com> 2020-06-19 16:33:06 +0200;